Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03934 ATGCTAGCTGTGGCACCATTAATGTGTAGCACAAGCCAAAGAGAAATGGAGGAGAATTTATCAATTGGAACATGTGATTTTGCTGATCTTTCCGAAGGAAACTTATTGGAAAGCATCAATTTCGAATTCGATGATGATTTCTTCGTATGCTTTGACGATGGAGATGTGTTACCGGATCTTGAAATGGACCCGGAAATGCTTGCTGAATTCTCGCTCAGCAGCGGTGAGGAATCGGAAATGAATTCATCGGTTACAATTACGAATAGCAAATCTTTTGATGATGGAAATATTGTTAATATTGAGAAAAAATTTCAAGATGAAGAGAAAGTAGGTTCTTCTTCAGATTCGGGTTCGAGCCATGTGGAAGAGATAATTAGCAAAAGAGATGAATCTGTGGTGATGAATCCATTACCTAAGGAAGGTGAGAAAGGAAGAAAATCATCATCTCAATCAAAGAATAATCATCAAGGGAAGAGAAAAGTGAAGGTGGATTGGACCCCAGAATTGCATAGAAGATTCGTACAGGCAGTAGAGCAGCTAGGTGTGGATAAGGCTGTACCTTCAAGAATTTTGGAAATTATGGGAATTGACTGCCTCACCCGCCATAACATTGCTAGTCACCTTCAAAAATATCGATCACATAGGAAGCATTTGCTAGCTCGTGAAGCTGAAGCAGCAAGTTGGAGTCAAAGAAGGCAATTGTTTGGAACAAGTAGAGGAGGAGTAGTAGGAGGAAAAAGAGATATTGTGAATCATTGGGTTGCACCAACCATGGGTTTTCCTCCCATGACTCCGGTACACCATTTTAGACCTCTACATGTATGGGGTCACCATCCTATGGAACAGTCCTATATGCATATGTGGCCTAAATATTCGCCGCACCAGCCACCAGCTAATTGGGCTGCACCTGCGCAGGCGGCTCCACCTCCTAATGCTTCGTATTGGCACCAACGGGCTCCAAATGCACCAACCGCAGGAACACCGTGTTTTCCACAGCCTCTGACAACAACGAGATTCGTCTCTCCAGCTATTCCGGGCATTCCACCACCCCATGCCATGTACCAAGTAGATCATGGTGTTGCCGTCCCTGCCGGTCAACAATCTCCTCCGCCTCTATTAGATTTTCATCCGTCAAATGAGAGCATAGATGCAGCAATTAGTGATGTATTATCAAAACCATATTTGCCATTGCCTCTTGGACTTAAAGCTCCAGCACTTGAAGGTGTGATGGGTGAATTGCAGAAACAAGGAGTTCCAAAAATTCCACCCTCTTGTGCTTGA 1281 0.4372 MLAVAPLMCSTSQREMEENLSIGTCDFADLSEGNLLESINFEFDDDFFVCFDDGDVLPDLEMDPEMLAEFSLSSGEESEMNSSVTITNSKSFDDGNIVNIEKKFQDEEKVGSSSDSGSSHVEEIISKRDESVVMNPLPKEGEKGRKSSSQSKNNHQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLFGTSRGGVVGGKRDIVNHWVAPTMGFPPMTPVHHFRPLHVWGHHPMEQSYMHMWPKYSPHQPPANWAAPAQAAPPPNASYWHQRAPNAPTAGTPCFPQPLTTTRFVSPAIPGIPPPHAMYQVDHGVAVPAGQQSPPPLLDFHPSNESIDAAISDVLSKPYLPLPLGLKAPALEGVMGELQKQGVPKIPPSCA 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03934 426 Gene3D - 157 218 - -
Trre12g03934 426 MobiDBLite consensus disorder prediction 103 161 - -
Trre12g03934 426 MobiDBLite consensus disorder prediction 121 149 - -
Trre12g03934 426 NCBIfam myb-like DNA-binding domain, SHAQKYF class 160 214 IPR006447 GO:0003677
Trre12g03934 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 157 216 IPR017930 -
Trre12g03934 426 PANTHER TRANSCRIPTION ACTIVATOR GLK1 10 425 IPR044825 GO:0003700|GO:0045893
Trre12g03934 426 Pfam Myb-like DNA-binding domain 163 212 IPR001005 -
Trre12g03934 426 SUPERFAMILY Homeodomain-like 158 217 IPR009057 -
Trre12g03934 426 FunFam Two-component response regulator 156 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03934 Trre-Chr12 54981043 54985717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03934 26 332 G2-like Transcription Factor Family AT5G44190 43.082 1.98e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre12g03934 Myb_DNA-binding 5.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03934 - - gmx:100775671 571.622