Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03932 ATGGCGTCGTTATTCAAGGATCCGGCGAAGATCTCGGCGTATAGAGATAGAAGATTTCCTGGAAATCAAGAAGAGTTTGAGCATGCGTTGATTACTTCAACCACCGTTTATGTTGGGAATATGTCGTTTTACACTACGGAAGAACAAATTTATGAACTTTTTTCACGAGCTGGTGAAATTAAGAAGATTATTATGGGTTTGGATAAGAACACTAAAACTCCTTGCGGTTTTTGCTTCGTTTTATATTACTCGCGTGAAGATACTGAGGATGCTTGCAAATATATAAGCGGGACGATACTGGATGATCGCCCTATTCGTGTTGATTTTGACTGGGGATTTCAGGATGGAAGACAATGGGGCCGGGGTCGTAGTGGTGGCCAGGTCCGTGATGAATATCGCACTGATTATGATCCAGGTAGAGGTGGATATGGGAAGTTGGTTCAGAAAGAGTTAGAAGTACAGAGGCATCTTGTAGATTATGGCACTGGTTCTTTGGGATCTTTTCCGCCTGTTATTCCTTCTTATGGTAGACATGGTGGTGGCCATGGTCATGGTGGTGGTTATGGTCATGGTGGTTCCCGTCGGCATGGTAGAGATTACCCTAGGAAGAGATACAGAGACGATGATCGCCACCACACACACGAGCCCTCAAAAAGAGCATCAGATAACGAATCTCGGAGGAACTCTGACCATGAATCTAGACCGGAAAAGAATCCACGATTTCGGGAGAGTGGTGATTCTGACGATGATGAGGAAGATGATCGAAAAAGACGGGGTTAA 780 0.4462 MASLFKDPAKISAYRDRRFPGNQEEFEHALITSTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRHLVDYGTGSLGSFPPVIPSYGRHGGGHGHGGGYGHGGSRRHGRDYPRKRYRDDDRHHTHEPSKRASDNESRRNSDHESRPEKNPRFRESGDSDDDEEDDRKRRG 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03932 259 MobiDBLite consensus disorder prediction 120 139 - -
Trre12g03932 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Trre12g03932 259 MobiDBLite consensus disorder prediction 124 138 - -
Trre12g03932 259 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
Trre12g03932 259 CDD RRM_NCBP2 36 113 IPR034148 -
Trre12g03932 259 MobiDBLite consensus disorder prediction 171 259 - -
Trre12g03932 259 SUPERFAMILY RNA-binding domain, RBD 22 144 IPR035979 GO:0003676
Trre12g03932 259 SMART rrm1_1 35 108 IPR000504 GO:0003723
Trre12g03932 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Trre12g03932 259 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 257 IPR027157 GO:0000339|GO:0005846|GO:0045292
Trre12g03932 259 Gene3D - 6 150 IPR012677 -
Trre12g03932 259 MobiDBLite consensus disorder prediction 201 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03932 Trre-Chr12 54968191 54972083 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03932 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 5.33e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03932 K12883 - gmx:100776217 404.831