Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03931 ATGGCGTCGTTATTCAAGGATCCGGCGAAGATCTCGGCGTATAGAGATAGAAGATTTCCTGGAAATCAAGAAGAGTTTGAGCATGCGTTGATTACTTCAACCACCGTTTATGTTGGGAATATGTCGTTTTACACTACGGAAGAACAAATTTATGAACTTTTTTCACGAGCTGGTGAAATTAAGAAGATTATTATGGGTTTGGATAAGAACACTAAAACTCCTTGCGGTTTTTGCTTCGTTTTATATTACTCGCGTGAAGATACTGAGGATGCTTGCAAATATATAAGCGGGACGATACTGGATGATCGCCCTATTCGTGTTGATTTTGACTGGGGATTTCAGGATGGAAGACAATGGGGCCGGGGTCGTAGTGGTGGCCAGGTCCGTGATGAATATCGCACTGATTATGATCCAGATATCCTTTTAACCATTTTCATAAATTTATCTGCAATTGACGTCATTCTAGGTGGATATGGGAAGTTGGTTCAGAAAGAGTTAGAAGTACAGAGGCATCTTGTAGATTATGGCACTGGTTCTTTGGGATCTTTTCCGCCTGTTATTCCTTCTTATGGTAGACATGGTGGTGGCCATGGTCATGGTGGTGGTTATGGTCATGGTGGTTCCCGTCGGCATGGTAGAGATTACCCTAGGAAGAGATACAGAGACGATGATCGCCACCACACACACGAGCCCTCAAAAAGAGCATCAGATAACGAATCTCGGAGGAACTCTGACCATGAATCTAGACCGGAAAAGAATCCACGATTTCGGGAGAGTGGTGATTCTGACGATGATGAGGAAGATGATCGAAAAAGACGGGGTTAA 825 0.4352 MASLFKDPAKISAYRDRRFPGNQEEFEHALITSTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLTIFINLSAIDVILGGYGKLVQKELEVQRHLVDYGTGSLGSFPPVIPSYGRHGGGHGHGGGYGHGGSRRHGRDYPRKRYRDDDRHHTHEPSKRASDNESRRNSDHESRPEKNPRFRESGDSDDDEEDDRKRRG 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03931 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Trre12g03931 274 MobiDBLite consensus disorder prediction 216 274 - -
Trre12g03931 274 CDD RRM_NCBP2 36 113 IPR034148 -
Trre12g03931 274 SUPERFAMILY RNA-binding domain, RBD 22 137 IPR035979 GO:0003676
Trre12g03931 274 Gene3D - 6 140 IPR012677 -
Trre12g03931 274 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 272 IPR027157 GO:0000339|GO:0005846|GO:0045292
Trre12g03931 274 FunFam Nuclear cap-binding protein subunit 2 4 165 - -
Trre12g03931 274 SMART rrm1_1 35 108 IPR000504 GO:0003723
Trre12g03931 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Trre12g03931 274 MobiDBLite consensus disorder prediction 186 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03931 Trre-Chr12 54968191 54972083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03931 33 122 Eukaryotic Initiation Factors Gene Family AT1G49760 27.778 5.30e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03931 K12883 - gmx:100776217 389.423