Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03920 ATGAAGCGTTATGTTTACATCGATGATGATGAGTCATCTCATGATCTTTACTGTGATAATCGAATATCAAATAGAAAATATACTTTGTTGAATTTTCTTCCAAAAAATTTATGGGAACAGTTCAGCCGGTTCATGAATCAGTACTTTTTGCTCATAGCTTGCCTGCAGTTATGGCCTCTCATTACTCCAGTGAATCCTGCCAGTACATGGGGTCCACTTATATTTATTTTTGCAGTCTCTGCATCAAAAGAGGCATGGGATGATTACAATAGATATCTTTCAGACAAAAAGGCAAATCAGAAGGAAGTGTGGGTTGTTAGGAAGGGCGTCAAGAAACTTATTCAAGCGCAGGATATTCTTGTGGGTAATATAATATGGTTACGTGAAAATGATGAAGTTCCCTGTGACCTTGTTTTGATTGGCACGTCTGATCCCCAAGGAGTTTGCTATGTAGAGACTTCTGCACTGGATGGTGAAACTGATCTAAAGACGCGGGTCATACCTCCTGCTTGCATGGGAATCAATGTTGAACTATTACACAAAATTAAGGGTGTAATAGAGTGTCCCAGTCCAGATAAAGATGTCAGAAGATTTGATGCAAACATGCGTTTGTATCCCCCATTTATTGATAATGATATATGCCCTTTAACCATTAAAAACACAATTCTTCAGTCATGTTACTTGCGAAATACTGAGTGGGCATGTGGAGTTGCTATCTATACAGGTAACGAAACCAAATTGGGCATGAGTAGGGGTATCGCAGAACCGAAGCTCACTTCCATGGATGCCATGATTGACAAGTTGACTGGTGCTATATTCGTATTCCAAATCGTTGTTGTTATGGTTCTTGGCATAGCGGGTAATGTTTGGAAGGACACAGAAGCAAGGAAACAATGGTATGTTCTTTACCCTCTTGAAGGCCCTTGGTATGAATTATTAGTAATCCCTTTGCGGTTCGAGCTTCTTTGTTCCATCATGATACCCATTTCAATTAAGGTATCTCTGGATTTAGTGAAGAGCATATATGCAAAGTTTATTGACTGGGACCATCAAATGATTGACCTAGAGACTAGCATTCCATCCCATGCAACAAATACAGCGATAAGCGAAGACCTTGGACAAGTTGAGTACATTTTGACGGACAAAACAGGAACCCTGACTGAAAATAAGATGATATTTAGAAGATGTTTTATTAGTGGCATTTCCTACGGAAATGAGAATGGAGATGCATTGAAAGATGTAGAGCTTCTTAATGCTGTTTCCAGCGGTTCTTATGATGTTGTACGATTTCTTACAGTTATGGCAATATGTAATACCGTCGTACCCACACGCAGCAAAACCGGAGATATCTTGTATAAGGCACAGTCTCAGGATGAAGATGCTCTTGTTCAAGCTGCTGCTCAGCTGCATATGGTTTTCTTCAATAAAAGTGGAAACATCCTTGAAGTCAAGTTCAACACTTCTATACTTCAGTATGAAGTCCTGGAAATCTTAGAGTTCACCTCTGATAGGAAAAGAATGTCGGTAGTGTTGAAAGATTGCCAAAATGGAAAGATCCTTCTCCTGTCAAAAGGAGCAGATGAGGCTATTCTTCCATATGCTCGTGCTGGGCAGCAAACCCGGCATCTCATTGAAGCTGTGGAGCAATATGCTCACTTGGGATTACGTACACTATGTCTGGCGTGGCGTGAGTTAAAGAAAGATGAATATCAGGATTGGTCTTTGATGTTTAAGGAAGCCAGTAGCACTTTGGTTGACAGGGAGTGGAGAGTAGCTGAGGTCTGCCAAAGAGTAGAACATGACTTGGAAATTCTTGGTGTTACAGCAATAGAGGATCGTTTACAGGATGGAGTTCCTGAAACAATAGAAACACTGAGGAAAGCTGGAATAAATTTTTGGATGTTAACAGGAGACAAGCAGAATACTGCAATACAAATTGCCCTGTCATGTAATTTTATTTCCCCAGAACCGAAGGGACAGCTTCTACTAATTGATGGCAAAACAGAGGATGAGGTTTGTAGAAGTTTAGAGAGAGTGCTTCGTACAATGCGGATAACTACCTCAGAACCCAAGGATGTGGCTTTTGTTGTTGATGGCTGGGCTCTTGAGATTGCACTTAAGCACTACCGTAAATCTTTCACTGAGCTGGCAGTATTGTCAAGGACTGCTATATGCTGTCGTGTGACGCCATCGCAAAAAGCACAGCTTGTACAGATCTTAAAATCATGCGATTATAGAACGTTGGCAATTGGAGATGGAGGCAATGATGTAAGGATGATACAACAAGCAGATATTGGTGTGGGCATCAGTGGCAGAGAAGGATTGCAGGCAGCAAGAGCAGCTGATTACAGCATCGGAAAGTTTAGATTCCTAAAGAGATTAATTCTGGTCCATGGCCGGTATTCATACAACCGTACCGCATTTCTTTCCCAGTATTCTTTCTACAAGTCCTTATTGATATGCTTCATTCAAATCTTTTTTTCATTTATTTCAGGCGTCTCTGGAACCAGCCTCTTCAATTCTGTTAGCTTGATGGCTTATAATGTTTTCTATACTAGTGTTCCTGTTCTAGTTAGTGTGCTTGACAAAGATCTTAGTGAGGAAACTGTGCTCCGGCATCCTCAAATTTTATTCTACTGCCAAGCGGGAAGGCTTCTAAACCCTAGTACATTTGCTGGATGGTTTGGGCGATCCCTCTTTCATGCAATAGTTGTATTTATAATAAGCATACATTCATATGCCTACGATAAAAGTGAAATGGAGGAAGTTTCAATGGTTGCACTTTCTGGTTGTATATGGTTGCAGGCTTTTGTAATAACAATGGAGACCAATTCCTTTACAATATTGCAACATCTTGCTATATGGGGTAACTTGGCTGCCTTTTATGTGATCAATTGGATCTTTAGTGCCCTTCCTTCGTCAGGGATGTATACAATTATGTTCCGGTTGTGTCGACAACCATCATATTGGATAACAATTTTTCTCATGACTGCCGCCGGGATGGGTCCAATTCTAGCCCTCAAGTACTTTAGATATACATATAAATCAAGCAAAATCAATTTACTTCAGCAGGCTGAACGCCTAGGGGGACCAATTTTGTCTCTTGCCACCATTGAGCCTCAGCTCAGATCTATGGAGAAAGATGTTTCTACCTTGTCAATAGCGCAACCCAAAAACAGAAATCCTGTATTTGAACCTCTGCTATCAGATTCTCCAAATTCTACGAGAAGATCTTTTGGAGCAGGATCACCGTTTGATTTTTTTCAGCCACAGTCAAGATTATCATTTTCTAACAACTACGCGAAAAATAGCAAGGACAAGTAG 3324 0.4058 MKRYVYIDDDESSHDLYCDNRISNRKYTLLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSASKEAWDDYNRYLSDKKANQKEVWVVRKGVKKLIQAQDILVGNIIWLRENDEVPCDLVLIGTSDPQGVCYVETSALDGETDLKTRVIPPACMGINVELLHKIKGVIECPSPDKDVRRFDANMRLYPPFIDNDICPLTIKNTILQSCYLRNTEWACGVAIYTGNETKLGMSRGIAEPKLTSMDAMIDKLTGAIFVFQIVVVMVLGIAGNVWKDTEARKQWYVLYPLEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSIYAKFIDWDHQMIDLETSIPSHATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCFISGISYGNENGDALKDVELLNAVSSGSYDVVRFLTVMAICNTVVPTRSKTGDILYKAQSQDEDALVQAAAQLHMVFFNKSGNILEVKFNTSILQYEVLEILEFTSDRKRMSVVLKDCQNGKILLLSKGADEAILPYARAGQQTRHLIEAVEQYAHLGLRTLCLAWRELKKDEYQDWSLMFKEASSTLVDREWRVAEVCQRVEHDLEILGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLLIDGKTEDEVCRSLERVLRTMRITTSEPKDVAFVVDGWALEIALKHYRKSFTELAVLSRTAICCRVTPSQKAQLVQILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQIFFSFISGVSGTSLFNSVSLMAYNVFYTSVPVLVSVLDKDLSEETVLRHPQILFYCQAGRLLNPSTFAGWFGRSLFHAIVVFIISIHSYAYDKSEMEEVSMVALSGCIWLQAFVITMETNSFTILQHLAIWGNLAAFYVINWIFSALPSSGMYTIMFRLCRQPSYWITIFLMTAAGMGPILALKYFRYTYKSSKINLLQQAERLGGPILSLATIEPQLRSMEKDVSTLSIAQPKNRNPVFEPLLSDSPNSTRRSFGAGSPFDFFQPQSRLSFSNNYAKNSKDK 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03920 1107 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 7 1027 - -
Trre12g03920 1107 NCBIfam phospholipid-translocating P-type ATPase 427 1023 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trre12g03920 1107 ProSitePatterns E1-E2 ATPases phosphorylation site. 381 387 IPR018303 -
Trre12g03920 1107 FunFam Phospholipid-transporting ATPase 449 592 - -
Trre12g03920 1107 PRINTS P-type cation-transporting ATPase superfamily signature 152 166 - -
Trre12g03920 1107 PRINTS P-type cation-transporting ATPase superfamily signature 379 393 - -
Trre12g03920 1107 PRINTS P-type cation-transporting ATPase superfamily signature 628 638 - -
Trre12g03920 1107 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Trre12g03920 1107 Pfam Cation transport ATPase (P-type) 436 532 - -
Trre12g03920 1107 Pfam Phospholipid-translocating P-type ATPase C-terminal 778 1015 IPR032630 -
Trre12g03920 1107 CDD P-type_ATPase_APLT 19 906 - -
Trre12g03920 1107 SFLD C1.7: P-type atpase like 362 801 - -
Trre12g03920 1107 Gene3D - 75 251 - -
Trre12g03920 1107 NCBIfam HAD-IC family P-type ATPase 717 834 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre12g03920 1107 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 386 573 IPR023299 GO:0000166
Trre12g03920 1107 FunFam Phospholipid-transporting ATPase 75 251 - -
Trre12g03920 1107 Pfam E1-E2 ATPase 99 291 - -
Trre12g03920 1107 MobiDBLite consensus disorder prediction 1063 1086 - -
Trre12g03920 1107 Gene3D - 602 790 IPR023214 -
Trre12g03920 1107 SUPERFAMILY Calcium ATPase, transduction domain A 100 248 IPR008250 -
Trre12g03920 1107 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 1015 IPR023298 -
Trre12g03920 1107 Gene3D - 443 584 IPR023299 GO:0000166
Trre12g03920 1107 FunFam Phospholipid-transporting ATPase 602 789 - -
Trre12g03920 1107 Pfam Phospholipid-translocating ATPase N-terminal 5 70 IPR032631 -
Trre12g03920 1107 MobiDBLite consensus disorder prediction 1066 1080 - -
Trre12g03920 1107 SFLD p-type atpase 362 801 IPR044492 -
Trre12g03920 1107 SUPERFAMILY HAD-like 374 805 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03920 Trre-Chr12 54917772 54928044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03920 1 1106 Primary Pumps ATPases AT5G44240 84.810 0.0 1986
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03920 K01530 - gmx:100786505 2071.2