Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03919 ATGACTACTATTTGTGCTGAGCAACAACAACACAAGTTTCATTCTTCTTACCAACCTCTCTCCCCCAAAAAATCCTTAAGAGAAATTGATATCCCACCAAGAAAACTCCTCACTCGCCGTAGCACCGCCGCCGACATGTTTTCCGACGATACCATCCTTCAAAAATTCCTTCCACACAATGATTCCGACTCTGATTCCGATGATCCTTACTCGTCGGACCATTTTCGTATGTACGAATTCAAAGTCCGCCGGTGCACTCGTAGCCGGAGCCACGACTGGACTGACTGTCCATTCGCACACCCCGGCGAAAAAGCACGCCGCCGTGATCCACGGCGGTTTCATTACTCAGGAACAGTCTGTCCTGAGTATCGTCGCGGTAGCTGTAACCGCGGCGATTCTTGCGAATTTTCCCATGGTGTTTTCGAATGCTGGCTTCATCCTGCAAGATACAGAACAGAAGCTTGCAAAGATGGTAAAAATTGTAAGAGAAAAGTTTGTTTCTTTGCACACACTCCTCGTCAATTAAGAATCCTTCCGGTAACTTCTTCATCTTCTTCAAATGAACAATTCTCATGCAACAAGAAAAATAACAAGATTTTGAATAACCATGTTGGTTCAAAATCAAACAATTGTTGTTTGTATTGTCATTGTGGTGGTAATGGTAATGGTAATGGTGCTAATAATTCTCCAACTTCAACACTTTTTGGTATGTCTCATTTTTCTTCACCACCGGCATCACCTCCTATGTCTCCAATGAAGCCAAGAAACACTGTTTCATCTCTCTCACGCTATGGTTCTTCCATTAATAGTAACAATCTTCGTTACAGAGACATGCTTATTGATCTTTTGGGTTCATTTAATGGTTTGAATTTCAATGAAGGTTCTTCTTCTTCTTCTTCCCCTGTTTCTGGTGCTAGTGCTAAAGCATTTCAGATGCAGAACATGGGTTATCTTGATATTCCTCTTAACTCTGAGGAACATATTCAGAATCAGTTTATTGTTTCACCTTCTTCTTTTGATCATCAACAGCAACATTTTAATATTCTTTCACCAATTCATCAGAATTTGACATTACCAAGTTTTAATGATGCTGATGACAATAACATGATTAACAACAAAATGATGTTTTTGGGAAATAATGAGAATAATAATAAGGTTGTTGTTGGTGGTGGTGATGCTCCTGATCTTGGATGGGTTAATGAGCTTCTCATGTAG 1215 0.4025 MTTICAEQQQHKFHSSYQPLSPKKSLREIDIPPRKLLTRRSTAADMFSDDTILQKFLPHNDSDSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGSCNRGDSCEFSHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSSSSSNEQFSCNKKNNKILNNHVGSKSNNCCLYCHCGGNGNGNGANNSPTSTLFGMSHFSSPPASPPMSPMKPRNTVSSLSRYGSSINSNNLRYRDMLIDLLGSFNGLNFNEGSSSSSSPVSGASAKAFQMQNMGYLDIPLNSEEHIQNQFIVSPSSFDHQQQHFNILSPIHQNLTLPSFNDADDNNMINNKMMFLGNNENNNKVVVGGGDAPDLGWVNELLM 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03919 404 Gene3D - 115 178 - -
Trre12g03919 404 FunFam Zinc finger CCCH domain-containing protein 66 72 140 - -
Trre12g03919 404 SMART c3hfinal6 114 140 IPR000571 GO:0046872
Trre12g03919 404 SMART c3hfinal6 149 172 IPR000571 GO:0046872
Trre12g03919 404 PANTHER UNKEMPT FAMILY MEMBER 48 403 IPR045234 -
Trre12g03919 404 ProSiteProfiles Zinc finger C3H1-type profile. 115 141 IPR000571 GO:0046872
Trre12g03919 404 Pfam CCCH-type zinc finger 119 139 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03919 Trre-Chr12 54904184 54905398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03919 67 176 C2H2 Transcription Factor Family AT5G07500 68.182 1.84e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre12g03919 zf-CCCH 1.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03919 K23047 - gmx:100787049 414.846