LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g03917	ATGCCAGCCCAGAAGCGTTCCTTACCTGAGTCAATGGACAATGAAGAAGCTTCACAGCTTGTTCACCATTCTCGCCATGTCAAACATCAACAGAACAACCGCGACCCACACTTCATCGACCAACAACAACAACAGCAGCAGCAGAACCAAGTCGAACAAGAGGAAGATGAAGAAGAAGAAGATGATGATGATCAGCAAGAGCACGATGAGGAAGAAGATGAACAAGGAGAAGAAGAGGAAGATGAAGAAGAGGCTGAAGATGATGAAGATGAAGATGGACAGCATAATAACGATGACAAAGAAAAATCACAGGATTCCGATGAAGACCCATCTTCTGATGATGAAGAAAAGCCTGAATATGTGTACATAGAACTTGCGAATATTCGTAAAGATGTCCAATGTCCAATTTGCCTCGGTATTATTAAGAAAACAAGAACTGTTATGGAATGCTTGCACCGCTTTTGCAGGGAATGCATTGACAAATCAATGCGATTGGGGAACAATGAATGCCCTGCTTGCCGCACACACTGTGCCAGCCGTCGCTCCTTGAGAGATGATCCAAACTATGATGCCCTTATTGCTGTTTTATATCCAAATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGAAATAAGCAGATTCAAGCTTCAATAGCAAAAGTGTTTCAACGGCAATCTGAAGCACTAGGCAAGAAACGTAAAGATTCAAGTTCATTTGTGACAAGATCACAGCGTAATCAAAGAAACCTTCAGTCTAGGAGACAAAACCATGCGACTGATGTTCAAGGATCTGAAAATGAGGAAAATGGCAATAATGACAGAGACTCGTCTTCCGGCGATGAGCGCGGCACAGAACACCGACAAAGAAAACGAAAGAAATGGACCAGGGTTCGCCCCTCTCAGCCCTCATCATCAATGGCAAGTCCTGATGGTGGAAGCGTAGAAAGTGATACAGATATAAATAGAGAAAATCGAGGAACTTCAAGGCAGGTGACAAAACCTGGAAAGCTGACTTGGGGAAGGGGTGGTTTTCGGAGTAACACAAGATATGGAAGTGGTGGTGGTAGCAACAGCAAAAGTTCCCGCAGTGGTCGAATGTCTAGGTTGGTTGACTATCTCAAAAACTTGGATGAAAACACTGCTGAGTTTGATGTTCATCTCATGTTTATTTCTCCGGACAAAGAAACTACACCAAGTTTGGAGAAGCTTCACCTGTCTTGCCGACCAACTTTGTCTGTCAAGAACCTTTATGAATATGTTGCTACTCAGACGCCTTTGAAAGCTGAAGAAGTTGAGATACTGGCAGTTAAAGGATGCAGCAGTGTAAATTGTGACAAATCAACTGACGAGAATTCACTCCTCGATTGTGATGAGCTAACATCGCTTGTTATAGATCCACAAAAAGATGAACTGGAAGTTTTGCAAGCTCATGAAACTGTGGCAGAGATTAGATCCAAAAGCATATCTAAAAGAGGCCATTTGATTCTGGCATACAAGAGGAAGGTCTAG	1530	0.4288	MPAQKRSLPESMDNEEASQLVHHSRHVKHQQNNRDPHFIDQQQQQQQQNQVEQEEDEEEEDDDDQQEHDEEEDEQGEEEEDEEEAEDDEDEDGQHNNDDKEKSQDSDEDPSSDDEEKPEYVYIELANIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAVLYPNIEKYEEEELEFREEEKNRNKQIQASIAKVFQRQSEALGKKRKDSSSFVTRSQRNQRNLQSRRQNHATDVQGSENEENGNNDRDSSSGDERGTEHRQRKRKKWTRVRPSQPSSSMASPDGGSVESDTDINRENRGTSRQVTKPGKLTWGRGGFRSNTRYGSGGGSNSKSSRSGRMSRLVDYLKNLDENTAEFDVHLMFISPDKETTPSLEKLHLSCRPTLSVKNLYEYVATQTPLKAEEVEILAVKGCSSVNCDKSTDENSLLDCDELTSLVIDPQKDELEVLQAHETVAEIRSKSISKRGHLILAYKRKV	509

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g03917	509	Pfam	Zinc finger, C3HC4 type (RING finger)	133	173	-	-
	Trre12g03917	509	MobiDBLite	consensus disorder prediction	9	23	-	-
	Trre12g03917	509	SMART	ring_2	134	173	IPR001841	-
	Trre12g03917	509	MobiDBLite	consensus disorder prediction	305	322	-	-
	Trre12g03917	509	Coils	Coil	200	223	-	-
	Trre12g03917	509	PANTHER	OS11G0578200 PROTEIN	66	508	IPR044592	-
	Trre12g03917	509	MobiDBLite	consensus disorder prediction	356	372	-	-
	Trre12g03917	509	MobiDBLite	consensus disorder prediction	1	117	-	-
	Trre12g03917	509	ProSiteProfiles	Zinc finger RING-type profile.	134	174	IPR001841	-
	Trre12g03917	509	SUPERFAMILY	RING/U-box	121	188	-	-
	Trre12g03917	509	MobiDBLite	consensus disorder prediction	274	294	-	-
	Trre12g03917	509	Coils	Coil	39	91	-	-
	Trre12g03917	509	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	127	197	IPR013083	-
	Trre12g03917	509	CDD	RING-HC_RING1-like	131	196	-	-
	Trre12g03917	509	MobiDBLite	consensus disorder prediction	247	273	-	-
	Trre12g03917	509	ProSitePatterns	Zinc finger RING-type signature.	150	159	IPR017907	-
	Trre12g03917	509	MobiDBLite	consensus disorder prediction	51	94	-	-
	Trre12g03917	509	MobiDBLite	consensus disorder prediction	36	50	-	-
	Trre12g03917	509	MobiDBLite	consensus disorder prediction	232	372	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g03917	Trre-Chr12	54870801	54877584	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g03917	132	299	C3H Transcription Factor Family	AT2G30580	27.174	5.37e-07	49.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g03917	K10695		-	gmx:100776547	603.208