Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03916 ATGGTTGACTTTCAAAGATTGGAACTTTTGTTGTTCCAGAGGAGAATGTGGCATGAAATTTTGTTTCAGGTTGTATTTGGTTGTTGGGTTGTTCTGCTTTTACTTAGTCCTGTGTCTGGTCTCAGACCCTTAAAGGATGATCAGATTCTAGTAACAAGAAAGGACGAAAGTGTCGTAGGTCCATTTTCAGAATGGAACATAACAGGAACATACAAAGGAACATGGAAATTTTTAGATACCGCAAACGGCTCTTCAAGATTTCCAGACACCAGTAGAACAAATGGCAATTCCATAATCACATTAAGTAGTACACCTACGACGATAACTGGAGTACATTATGTCCATGGAGTAGTTATATTCGATGATTTGTTTGACAATGAACATGATGTTGGTAGTGCTCAAATCAGCTTCGAAGGCGTATATATATGGCCGTTTAAACAGCTCAGAATGGTAACAAACAGTGGAAAAGAAAGAGAGTTGAATCAGTATGAAGATTATATTTTATCGAATCCATATCGTCTACTCGCAGCTTTCTCATCTCAGACACTGCAAGGTTCGTCGCAAGATAAGATGTGGAGAAGAAAACATTCACTAATGCATGAAATGGAGAAACATTGTAATGCTGAAATTTCTGCAATGGTTTCGCACTTGCCATCATCAAAAAATGCAGGCGAGCATGACCATTTTTCTCTCGAAGGGTTAATGAAGAGTCCTCCGGTGGATGATAGCGGAAACTGCTTGCCACCATTACTATTAAATGCAACTTCTGTTATAAGAATTGATGTCGACTATAACAAAGCAGTGTACTATACTTTGATGGTTGCTTTTGTCTCTTTCTTGCAAGTTCTTCTGTTGATTCGTCAAATCAACCATAGCGGCACTCAATCTGGAGCTGCTAAGGTGTCGATATTAATGATTGGTCAACAAGCGTTAATGGATGCCCATTTTACCCTTTTACATCTGACTACAGGAATGATAGTTAAATCCATGTTAATTGTTTTTGCAATGGCTGCGTTTTTCAAATTTGTGCTCTTCTCAGTATTTGAGACGAGATATCTCGTTGTTATTTGGAAGGCAGGTAATAGGTCTTCGATTAACGGAGAAGGTTACGAGGCTACGAGGCATGAACTGTGGCGTGAGCTTTCACTTATACACAGTTGTTTATATGGGACACTGTTAATAGCAGGAATTATAAGCATGTATGAGTTCCATAATCATATGAAACTGATTCTTCTTCTTATGTACTCCTTTTGGATACCTCAGATAATCAGCAATGTTATTCATGATTCACGCAAACCTTTGGATCCTCATTATATATTAGGAATAACTGTTACTCGGCTCGCAATCCCATTATATATATTTGGTTGGCCGAACAACTTCATGCACATCGAACCAGACAAGAACTGGTGTGTTTGTTTGACTATGTTTCTTGGGCTTCAAGCTATGTTTCTTCTCCTTCAACACTACCTTGGACCGCGTTGGTTCATTCCTCGTCAGATTCTACCTGAGAAATACAACTATCATAGAAAGTTTGATCATAATAAAAGACATGCTACAGAATGTGTTATTTGCATGACAGCCATTGATCTTTCTCACATAACAAGTGATTGCATGGTGACACCTTGTGATCATTTCTTCCATTCTGGTTGTTTACAAAGATGGATGGATATAAAGATGGAATGTCCAACTTGCCGTCGCGCCTTACCATCTTCTTAG 1716 0.3864 MVDFQRLELLLFQRRMWHEILFQVVFGCWVVLLLLSPVSGLRPLKDDQILVTRKDESVVGPFSEWNITGTYKGTWKFLDTANGSSRFPDTSRTNGNSIITLSSTPTTITGVHYVHGVVIFDDLFDNEHDVGSAQISFEGVYIWPFKQLRMVTNSGKERELNQYEDYILSNPYRLLAAFSSQTLQGSSQDKMWRRKHSLMHEMEKHCNAEISAMVSHLPSSKNAGEHDHFSLEGLMKSPPVDDSGNCLPPLLLNATSVIRIDVDYNKAVYYTLMVAFVSFLQVLLLIRQINHSGTQSGAAKVSILMIGQQALMDAHFTLLHLTTGMIVKSMLIVFAMAAFFKFVLFSVFETRYLVVIWKAGNRSSINGEGYEATRHELWRELSLIHSCLYGTLLIAGIISMYEFHNHMKLILLLMYSFWIPQIISNVIHDSRKPLDPHYILGITVTRLAIPLYIFGWPNNFMHIEPDKNWCVCLTMFLGLQAMFLLLQHYLGPRWFIPRQILPEKYNYHRKFDHNKRHATECVICMTAIDLSHITSDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRALPSS 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03916 571 PANTHER RING ZINC FINGER PROTEIN 138 569 - -
Trre12g03916 571 SUPERFAMILY RING/U-box 502 569 - -
Trre12g03916 571 SMART ringv_2 520 565 IPR011016 GO:0008270
Trre12g03916 571 SMART ring_2 521 564 IPR001841 -
Trre12g03916 571 CDD RING-H2_TUL1-like 516 569 - -
Trre12g03916 571 ProSiteProfiles Zinc finger RING-type profile. 521 565 IPR001841 -
Trre12g03916 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 507 571 IPR013083 -
Trre12g03916 571 FunFam E3 ubiquitin-protein ligase, putative 507 571 - -
Trre12g03916 571 Pfam Ring finger domain 520 565 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03916 Trre-Chr12 54860142 54864598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03916 508 571 C3H Transcription Factor Family AT1G53010 32.308 2.23e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03916 K23788 - gmx:100780140 836.254