Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03913 ATGGCTATGATGAGGGCTAGTTTTGTTTTGATTATTTCAATGGTCATTCTTAGTTTTTCATTGTCATATGGTATTAAATTTAACGTTGGTGGCAAAGATGGTTGGGCTGTGGAACCTTCACAATGGTATGGTCAATGGGCTGAGAAAAATAGGTTCCAAATCAATGACACACTTTATTTTAAGTACACCAAAGGATCTGATTCAGTGTTGGTGGTAAGCAAAGAAGATTACTACTCATGCAACATATGGAATTCGATCCAGAAATTGGACGGTGGAGATTCAACTTTCACATTTGACAAATCTGGTCCTTTTTTCTTCATCAGTGGAAACGTTGAAAATTGCAAAAAGGGTGAAAAGTTGATTGTTGTTGTTTTGTCGCCAAATCATGGTCATCATGGTCCTCATCATCGCAAACAAGGACCATCATCCGCACCTTCACCATCATGGAAGGCTCCTTCACCAGCATGGACTCCAACATGGACACCGAACGCTCCTTCACCATCTTGGAAGGCTTCTTCACCAGCATGGACTCCAACATGGACACCAAACGCTCCTACACCATCTTCGAAGGCTCCTTCACCGTCATTGACACCTTCATCGAATGCTCCTTCACCGACACGGACTCCATCATGGACACATGATTCAAATGCTCCTTCCCCATCATCGAAGGCTCCTTCACCAACATGGACTCCAGCATGGACACCTACATCGAATGCTCCTTCATCACCATCATCCAAAGCTCCTTCACCAGCATGGACTCCAACATGGGCACCTACATCGAATACTCCTTCACCAATCGAGGCTCCAGCATGGACACCTATATCGGATGCTCCTTCACAGAGTGTTGTTGGCGAGGTATCTCCGGCGCCGTCTCCTGCTCATTCTGGTTCAACTAGGTTTAGTGGTTTTAGCATTGGATTTGGGGTTGCCTTGATCATAGGAATCTTTGTTATTTAG 957 0.4472 MAMMRASFVLIISMVILSFSLSYGIKFNVGGKDGWAVEPSQWYGQWAEKNRFQINDTLYFKYTKGSDSVLVVSKEDYYSCNIWNSIQKLDGGDSTFTFDKSGPFFFISGNVENCKKGEKLIVVVLSPNHGHHGPHHRKQGPSSAPSPSWKAPSPAWTPTWTPNAPSPSWKASSPAWTPTWTPNAPTPSSKAPSPSLTPSSNAPSPTRTPSWTHDSNAPSPSSKAPSPTWTPAWTPTSNAPSSPSSKAPSPAWTPTWAPTSNTPSPIEAPAWTPISDAPSQSVVGEVSPAPSPAHSGSTRFSGFSIGFGVALIIGIFVI 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03913 318 MobiDBLite consensus disorder prediction 193 295 - -
Trre12g03913 318 CDD OsENODL1_like 26 125 IPR041846 -
Trre12g03913 318 ProSiteProfiles Phytocyanin domain profile. 25 126 IPR003245 GO:0009055
Trre12g03913 318 PANTHER BLUE COPPER PROTEIN 26 188 IPR039391 GO:0009055
Trre12g03913 318 MobiDBLite consensus disorder prediction 127 295 - -
Trre12g03913 318 Pfam Plastocyanin-like domain 35 117 IPR003245 GO:0009055
Trre12g03913 318 Gene3D - 25 134 IPR008972 -
Trre12g03913 318 FunFam Early nodulin-like protein 1 24 129 - -
Trre12g03913 318 SUPERFAMILY Cupredoxins 24 125 IPR008972 -
Trre12g03913 318 MobiDBLite consensus disorder prediction 153 184 - -
Trre12g03913 318 PRINTS Proline rich extensin signature 146 158 - -
Trre12g03913 318 PRINTS Proline rich extensin signature 185 197 - -
Trre12g03913 318 PRINTS Proline rich extensin signature 220 236 - -
Trre12g03913 318 PRINTS Proline rich extensin signature 198 219 - -
Trre12g03913 318 PRINTS Proline rich extensin signature 162 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03913 Trre-Chr12 54840833 54842266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03913 3 168 Phytocyanin Superfamily AT4G28365 45.930 2.11e-45 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03913 - - tpra:123894715 318.161