Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03900 ATGGATCATGATAAACAAGGTTGTCAACCACCTTCTTCAATCAAAGTGGAAAGAAAGATTGTTGAGAAAAATAGGAGAAATCAGATGAAGATTCTCTTTTCCAAACTCAACTCTCTTCTTCCTAGCTATAATCCCAAGGAAATGCTACCATTAATTGATCAAGTAGATGAGGCTATAAACTACATAAAGAGTTTAGAGACAAATGTGAAGTTGGCAAAGGAGAAAAAAGAAAGTTTAATGAGAAATAAGAGATCACGTGGTGACTGCTCGAGTTCTTCTGGAGCAAAAGGAAGCACAAAATCACCAAAAATCGAGATTCATGAAATGGGCACCTCTTTACAAATCATTGTAACATGTGGAGTTGATCATCAATTCATTTTCTATGAAATTATCCGAATATTGAATGAAGAGAATGTGGAGGTCATTACTGCAAATTCTTCTTTAACTGGAGATTCCGTTTTTCATATCGTGCACGCTGAGATTCCGCAATCTTTGCGTCAATTTGGAGCAACCAAAGTAAGTGAGAGATTGAAAAGGTTTGTGAACGGATCAGGGAGTGAGATAGAAACAGAGCCTCAACTATGGGATTTTGAAATTGGAACTCAGAATTCGGAGCTTCTAGATTCTATAGTATCCAAGAGTTTACCAAATCTTTGA 657 0.3653 MDHDKQGCQPPSSIKVERKIVEKNRRNQMKILFSKLNSLLPSYNPKEMLPLIDQVDEAINYIKSLETNVKLAKEKKESLMRNKRSRGDCSSSSGAKGSTKSPKIEIHEMGTSLQIIVTCGVDHQFIFYEIIRILNEENVEVITANSSLTGDSVFHIVHAEIPQSLRQFGATKVSERLKRFVNGSGSEIETEPQLWDFEIGTQNSELLDSIVSKSLPNL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03900 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
Trre12g03900 218 Gene3D - 10 92 IPR036638 GO:0046983
Trre12g03900 218 SMART finulus 19 71 IPR011598 GO:0046983
Trre12g03900 218 MobiDBLite consensus disorder prediction 85 99 - -
Trre12g03900 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 83 IPR036638 GO:0046983
Trre12g03900 218 Coils Coil 55 82 - -
Trre12g03900 218 FunFam Transcription factor bHLH162 6 91 - -
Trre12g03900 218 MobiDBLite consensus disorder prediction 75 102 - -
Trre12g03900 218 Pfam Helix-loop-helix DNA-binding domain 16 66 IPR011598 GO:0046983
Trre12g03900 218 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03900 Trre-Chr12 54771018 54777593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03900 16 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 42.373 1.63e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre12g03900 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03900 - - mtr:25487667 290.812