Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03898 ATGATCATCAATGGAGCATTATCAGGAAACTATCTTGGACTATTTAACAGATCAAGTTCAGGTGATGATTCTAACCATGTTTTTGCAGTTGAATTCGATGATTTTAGAAACGAAGAGTTTGATGAAGTTAATGATAATCATGTTGGTGTTGATTTGAATTCAATGGTTTCTATGTATTCTGAACCTGCTGAATTTTGGGGTGGAAAAAATGGTGAAAATTTAGAAAAATTGAAACTTTCTAGTGGTGAAAATTATCAAGTTTGGATTGAGTTTAGGGATTTTGAAATTAATGTTACTATGGCTCCGGCGGGGAAAAGAAAACCGAAAAAGCCTTTGATTAGTAAGCCAATTAATTTTTCTAGGGTTTTTTTGGATGAAATGTATGTTGGATTTTCTGGATCAACTGGGAAAATGGTTGATACTTGTAGAATTTTGGCTTGGAGTTTTAGTCATACAAATTTTTCAATTGGTGATGCTTTGAATACTAAACATTTACCTAATTATGTGAATCCAAAGAAATTAATGTATAAATCTAAGGGTTTCATTATTTGTGTGATTTTTGGTTTAGTTTTAGTCTTTGGTTGTTGCACTTTGGTTTTATTCATTTTGATGAGAAAAAGGAAGGAAGATGAAGAGGGAAAATTTGAAGAATGGGAATTGGAGTATTGGCCACATAAGATTAGCTATAAGGAGATTTGCGATGGAACGGGTGGATTTTGTGAAGAGAATGTCATAGGGATTGGAACAAGTGGGAAAGTATACAAAGGAGTTTTGAAAGGAGGAGAAGAAGTCGCGGTGAAGAGATTCAATCACGATACTCAACATGGAATAAGAGGCTTTTTAGCAGAGATTTCGAGCCTAGGAAGAATGAAACATCGAAACTTGTTAGGTTTCAAAGAAGTTGTTTGTGGTAGAAGACCAATTGTAATGGATGAACCACCATTGGTTGAATTGGTATCTTCTCTTACGGAGAAAGGTGAATTAAGTAATGCAATCGATGAGCGTTTGAAGAGTCAAATAGAGTGTAAAAATAACACCGTGGTCGCTGAGAGATTGCTTCATTTGGGTTTGTTATGTGCTAGTTTTGACCCTTGTGTTAGACCTACAATGAGACAGGTTGTGAAAGCTTTGGAAGGTGTAAAATGCACCGAGTGTAATGAAGAGTGTGTTCATGTGAGCCTTATCAGAAAAATAAACTCAGCAGCTTCTTGGTCTAAGAGTTCTACTGATTCTGCTCGTGTAAATTTTCCTACCCTTGATGACATTTTACCGTATAAATATTTTTCTGGAGATTCTTTAAGTGTGTCTTGTCTCAGCCTAGAGCCAATATCGGATTCTCTCTCAGAAGGAAGGTGA 1356 0.3562 MIINGALSGNYLGLFNRSSSGDDSNHVFAVEFDDFRNEEFDEVNDNHVGVDLNSMVSMYSEPAEFWGGKNGENLEKLKLSSGENYQVWIEFRDFEINVTMAPAGKRKPKKPLISKPINFSRVFLDEMYVGFSGSTGKMVDTCRILAWSFSHTNFSIGDALNTKHLPNYVNPKKLMYKSKGFIICVIFGLVLVFGCCTLVLFILMRKRKEDEEGKFEEWELEYWPHKISYKEICDGTGGFCEENVIGIGTSGKVYKGVLKGGEEVAVKRFNHDTQHGIRGFLAEISSLGRMKHRNLLGFKEVVCGRRPIVMDEPPLVELVSSLTEKGELSNAIDERLKSQIECKNNTVVAERLLHLGLLCASFDPCVRPTMRQVVKALEGVKCTECNEECVHVSLIRKINSAASWSKSSTDSARVNFPTLDDILPYKYFSGDSLSVSCLSLEPISDSLSEGR 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03898 451 Gene3D Phosphorylase Kinase; domain 1 201 300 - -
Trre12g03898 451 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 286 IPR013320 -
Trre12g03898 451 ProSitePatterns Protein kinases ATP-binding region signature. 245 267 IPR017441 GO:0005524
Trre12g03898 451 Gene3D - 2 155 - -
Trre12g03898 451 CDD lectin_legume_LecRK_Arcelin_ConA 5 150 IPR001220 GO:0030246
Trre12g03898 451 Gene3D Transferase(Phosphotransferase) domain 1 301 399 - -
Trre12g03898 451 Pfam Legume lectin domain 5 153 IPR001220 GO:0030246
Trre12g03898 451 SUPERFAMILY Protein kinase-like (PK-like) 219 326 IPR011009 -
Trre12g03898 451 SMART tyrkin_6 239 377 IPR020635 GO:0004713|GO:0006468
Trre12g03898 451 PANTHER - 300 379 - -
Trre12g03898 451 Pfam Protein kinase domain 241 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03898 Trre-Chr12 54741718 54743472 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03898 3 299 Receptor kinase-like Gene Family AT4G04960 51.667 1.40e-91 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre12g03898 Lectin_legB 1.1e-40 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03898 - - gmx:100804025 439.499