Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03897 ATGTCTCTTCTCTTAATCCTCAACATAACACTATTATTAGTTTTGTTTTCAGTTACACTATCATCATCATCAACTGAATTTGTCTATAACAGAAACTTCAACTCAACAAACATAAACATTTATGGAAATGCAACAATTCAAAACTCAATTCTAACTCTCACAAACCAAACATTCTTTTCAATTGGTCGTGCTTTTTACCCTCAAAAACTACCTACAAAACAAAACAAAAATTCTTCAATTTTTCTTCCTTTTGCAACTTCATTCATATTTTCAATTTCTCCATGCAAAAATCTCCCAGTTGCTCATGGTTTTGCTTTCATTTTCTCACCTTCAATGATCATCAATGGAGCATTATCAGGAAACTATCTTGGACTATTTAACAGATCAAGTTCAGGTGATGATTCTAACCATGTTTTTGCAGTTGAATTCGATGATTTTAGAAACGAAGAGTTTGATGAAGTTAATGATAATCATGTTGGTGTTGATTTGAATTCAATGGTTTCTATGTATTCTGAACCTGCTGAATTTTGGGGTGGAAAAAATGGTGAAAATTTAGAAAAATTGAAACTTTCTAGTGGTGAAAATTATCAAGTTTGGATTGAGTTTAGGGATTTTGAAATTAATGTTACTATGGCTCCGGCGGGGAAAAGAAAACCGAAAAAGCCTTTGATTAGTAAGCCAATTAATTTTTCTAGGGTTTTTTTGGATGAAATGTATGTTGGATTTTCTGGATCAACTGGGAAAATGGTTGATACTTGTAGAATTTTGGCTTGGAGTTTTAGTCATACAAATTTTTCAATTGGTGATGCTTTGAATACTAAACATTTACCTAATTATGTGAATCCAAAGAAATTAATGTATAAATCTAAGGGTTTCATTATTTGTGTGATTTTTGGTTTAGTTTTAGTCTTTGGTTGTTGCACTTTGGTTTTATTCATTTTGATGAGAAAAAGGAAGGAAGATGAAGAGGGAAAATTTGAAGAATGGGAATTGGAGTATTGGCCACATAAGATTAGCTATAAGGAGATTTGCGATGGAACGGGTGGATTTTGTGAAGAGAATGTCATAGGGATTGGAACAAGTGGGAAAGTATACAAAGGAGTTTTGAAAGGAGGAGAAGAAGTCGCGGTGAAGAGATTCAATCACGATACTCAACATGGAATAAGAGGCTTTTTAGCAGAGATTTCGAGCCTAGGAAGAATGAAACATCGAAACTTGTTAGGTTTCAAAGGTTGGAGTAAAGGAAAAGGAGGGAAATTGATATTGGTTTATGATTACATGGAGAATGAGAGTTTAGACAAAAGAATCTTCGAGTGTGACGATACCAAGTTGCTTAATTGGGAACAAAGAGTAAGAGTTTTGGAAAATGTAGCTAGTGGAGTTTTATATCTACATGAAGGTTGGGAATTTGAGGTTTTGCATAGAGACATAAAAGCAAGTAATGTACTACTTGACAAAGATATGAATGCAAGAATAGGTGATTTTGGACTTGCTAGGTTGCAGCATCAAGAACTAGTAACCGACACAACAAGAGTTGTAGGGACTTTAGGGTACATGGCACCGGAGTTACTCAAAGTTGGTAAACCATCGACTGCGACTGATGTTTATAGTTTTGGAATATTGGTTTTAGAAGTTGTTTGTGGTAGAAGACCAATTGTAATGGATGAACCACCATTGGTTGAATTGGTATCTTCTCTTACGGAGAAAGGTGAATTAAGTAATGCAATCGATGAGCGTTTGAAGAGTCAAATAGAGTGTAAAAATAACACCGTGGTCGCTGAGAGATTGCTTCATTTGGGTTTGTTATGTGCTAGTTTTGACCCTTGTGTTAGACCTACAATGAGACAGGTTGTGAAAGCTTTGGAAGGTGTAAAATGCACCGAGTGTAATGAAGAGTGTGTTCATGTGAGCCTTATCAGAAAAATAAACTCAGCAGCTTCTTGGTCTAAGAGTTCTACTGATTCTGCTCGTGTAAATTTTCCTACCCTTGATGACATTTTACCGTATAAATATTTTTCTGGAGATTCTTTAAGTGTGTCTTGTCTCAGCCTAGAGCCAATATCGGATTCTCTCTCAGAAGGAAGGTGA 2088 0.3515 MSLLLILNITLLLVLFSVTLSSSSTEFVYNRNFNSTNINIYGNATIQNSILTLTNQTFFSIGRAFYPQKLPTKQNKNSSIFLPFATSFIFSISPCKNLPVAHGFAFIFSPSMIINGALSGNYLGLFNRSSSGDDSNHVFAVEFDDFRNEEFDEVNDNHVGVDLNSMVSMYSEPAEFWGGKNGENLEKLKLSSGENYQVWIEFRDFEINVTMAPAGKRKPKKPLISKPINFSRVFLDEMYVGFSGSTGKMVDTCRILAWSFSHTNFSIGDALNTKHLPNYVNPKKLMYKSKGFIICVIFGLVLVFGCCTLVLFILMRKRKEDEEGKFEEWELEYWPHKISYKEICDGTGGFCEENVIGIGTSGKVYKGVLKGGEEVAVKRFNHDTQHGIRGFLAEISSLGRMKHRNLLGFKGWSKGKGGKLILVYDYMENESLDKRIFECDDTKLLNWEQRVRVLENVASGVLYLHEGWEFEVLHRDIKASNVLLDKDMNARIGDFGLARLQHQELVTDTTRVVGTLGYMAPELLKVGKPSTATDVYSFGILVLEVVCGRRPIVMDEPPLVELVSSLTEKGELSNAIDERLKSQIECKNNTVVAERLLHLGLLCASFDPCVRPTMRQVVKALEGVKCTECNEECVHVSLIRKINSAASWSKSSTDSARVNFPTLDDILPYKYFSGDSLSVSCLSLEPISDSLSEGR 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03897 695 CDD lectin_legume_LecRK_Arcelin_ConA 25 261 IPR001220 GO:0030246
Trre12g03897 695 FunFam L-type lectin-domain containing receptor kinase S.4 427 633 - -
Trre12g03897 695 Gene3D - 23 275 - -
Trre12g03897 695 ProSiteProfiles Protein kinase domain profile. 350 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03897 695 Pfam Protein kinase domain 352 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03897 695 Pfam Legume lectin domain 25 264 IPR001220 GO:0030246
Trre12g03897 695 Gene3D Transferase(Phosphotransferase) domain 1 427 643 - -
Trre12g03897 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Trre12g03897 695 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 265 IPR013320 -
Trre12g03897 695 SUPERFAMILY Protein kinase-like (PK-like) 328 622 IPR011009 -
Trre12g03897 695 Gene3D Phosphorylase Kinase; domain 1 312 426 - -
Trre12g03897 695 PANTHER - 20 624 - -
Trre12g03897 695 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Trre12g03897 695 SMART serkin_6 350 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03897 695 FunFam L-type lectin-domain containing receptor kinase V.9 23 270 - -
Trre12g03897 695 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 310 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03897 Trre-Chr12 54741718 54743805 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03897 23 573 Receptor kinase-like Gene Family AT4G04960 53.237 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre12g03897 Pkinase 3.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03897 - - gmx:100804025 975.311