Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03896 ATGCTTCAACTTAAGCAACTTCTCATTCTTCTTCACACTGTAACCATATTTATATGTTGTGTTTCAACTACTGAATTTGTCTATAATACAAACTTCAACTCAACAAACATTAACCTATTTGGAAATGCAACCATTCACAACTCCATTCTCACTCTCACTAATGGCACTTATTTCTCTATAGGTCGTGCTTTTTACCCTCTAAAAGTACCAACCAAATCACCCAACTCTTCCACTCTTCTCCCCTTTGCTACTTCCTTCATTTTCTCAGTTGCTCCCATCAAAAACATTATCACAGGACATGGTTTTGCTTTCATATTCACACCTTCAAGAGGTCTAAATGGAACAACATCAAACGAGTATATCGGTCTCTTCAATTTGACCAACGAAGGTAATCCTAACAACCATGTTTTTGGAGTTGAATTCGATATCATTAGAAACGAAGAATTCAATGATACAAATGGTAATCATGTTGGTATCGATGTAAACTCGCTTAAATCGTTAACTTCACATGAGGCTGGCTACTGGGGCGGAAAATATGACAATGAATTTAAGGTGTTGAACATCAAAAGTGGACAAAATTATCAAGTATGGATTGAATTTATTCATTCCCGGCTAAACGTTACAATGGGTCGGGCAGGACAAAAGAGACCTCGAGTTCCTCTCATCAGTATCAATGTTAACCTTTCTGGGGTCCTTATGGATGAAACATATGTTGGATTTTGCGCAGCCACAGGGAAAATAATAGACAGTAGTAAGATTCTTGCTTGGAGCTTTAGTAATACAAATTTTTCAATTGGTAATGCTTTAGTGACAAACAAATTGCCTTCATTTGTGCTTCATAAGGGGTGGTTTTCGGGAGCAAAAGCTATAGCTGTAGGTGTCACCAATGTTGTCTGTGTATTAATCATCGGTTGCGGTTGTGCAGTGTTTTTCATTCTCTATAGGAGGAACAAGGCAGAGGAAGAAATTGAAGAATGGGAACTAGAGTATTGGCCACATAGAATTAGTTTCGAAGAGATTCATGCAGCAACAAGAGGGTTCTCTGAAGAGAATGTGATTGCTGTAGGAGGGAATGGAAAGGTATATAAAGGGATTTTGCAAGGAGTTGAAGTTGCGGTCAAGAGAATCCATCAAGAAAGAGTAGATGGAATGAGAGAGTTTTTGGCTGAGGTTTCAAGCATAGGAAGAATGAAACACAGAAATTTAGTAGGACTGAGAGGTTGGTGCAAAAAAGAGAAGGGGAACTTGATTCTAGTTTATGACTTCATGAACAATGGAAGTTTAGACAAATGGATTTTTGAGTGTGAAGAAGGAAAGATGTTAACATGGGAAGAGAGGATTCAAGTTTTGAAAAATGTAGCCGCAGGGATTCTTTACCTGCATGAGGGTTGGGAAGTTAAGGTCTTGCATAGGGATATCAAAGCAAACAATGTTCTACTTGACAAGGAAATGAATGCTAGATTGGGGGATTTTGGTTTGGCTCTTATGCATGAGCATCATGGAGAAATTGCCACCACAACAAAAGTATTGGGAACATTAGGATACATTGCTCCGGAAGTGATTCGAACAGGAAGAGCATCGACTATGTCTGATGTGTTTGGCTTCGGTATATTGTTATTGGAAGTAATATGCGGACGAAGACCAATTGAAGAACTTAAGCCAGGGCTAACTGAGTGGGTGAAGTCTCTAATGGTGCTTGGCCAATTACACAATGCTGTTGACGAAAGGTTGAAGGACAAAGGAGGATACCCTATTGAGGAAGCTGAGAGATTTCTTCATTTGGGTTTGTTGTGTTCAAATTCAGACCCTAGTGTTAGACCAATAATGAGGCAGGTTGTGAAAATGTTAGAGGGAGAAATGGATAGCATTGAATCTGATGAAGGAAATATGGAGAAGAGTTTACTTGGAAGAATAAAATCAACTGCAATGTGGTCTAGAACTGAAAGTGGATACAAAGATTACCCTAGTTTTGAAGAAATTATGATGTTTATCGATAATACCAAGACATCTACAAGTGGTAATTCAACTGCTATACAAGCATCAGATTCAGATATTATTTGGGAAGGCAGATAA 2073 0.3849 MLQLKQLLILLHTVTIFICCVSTTEFVYNTNFNSTNINLFGNATIHNSILTLTNGTYFSIGRAFYPLKVPTKSPNSSTLLPFATSFIFSVAPIKNIITGHGFAFIFTPSRGLNGTTSNEYIGLFNLTNEGNPNNHVFGVEFDIIRNEEFNDTNGNHVGIDVNSLKSLTSHEAGYWGGKYDNEFKVLNIKSGQNYQVWIEFIHSRLNVTMGRAGQKRPRVPLISINVNLSGVLMDETYVGFCAATGKIIDSSKILAWSFSNTNFSIGNALVTNKLPSFVLHKGWFSGAKAIAVGVTNVVCVLIIGCGCAVFFILYRRNKAEEEIEEWELEYWPHRISFEEIHAATRGFSEENVIAVGGNGKVYKGILQGVEVAVKRIHQERVDGMREFLAEVSSIGRMKHRNLVGLRGWCKKEKGNLILVYDFMNNGSLDKWIFECEEGKMLTWEERIQVLKNVAAGILYLHEGWEVKVLHRDIKANNVLLDKEMNARLGDFGLALMHEHHGEIATTTKVLGTLGYIAPEVIRTGRASTMSDVFGFGILLLEVICGRRPIEELKPGLTEWVKSLMVLGQLHNAVDERLKDKGGYPIEEAERFLHLGLLCSNSDPSVRPIMRQVVKMLEGEMDSIESDEGNMEKSLLGRIKSTAMWSRTESGYKDYPSFEEIMMFIDNTKTSTSGNSTAIQASDSDIIWEGR 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03896 690 SUPERFAMILY Protein kinase-like (PK-like) 323 617 IPR011009 -
Trre12g03896 690 Gene3D Transferase(Phosphotransferase) domain 1 423 638 - -
Trre12g03896 690 ProSiteProfiles Protein kinase domain profile. 347 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03896 690 SMART serkin_6 347 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03896 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Trre12g03896 690 Pfam Protein kinase domain 349 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03896 690 FunFam L-type lectin-domain containing receptor kinase S.4 423 629 - -
Trre12g03896 690 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 261 IPR013320 -
Trre12g03896 690 Pfam Legume lectin domain 24 262 IPR001220 GO:0030246
Trre12g03896 690 FunFam L-type lectin-domain containing receptor kinase S.4 22 266 - -
Trre12g03896 690 PANTHER - 41 620 - -
Trre12g03896 690 Gene3D Phosphorylase Kinase; domain 1 310 422 - -
Trre12g03896 690 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 309 422 - -
Trre12g03896 690 CDD lectin_legume_LecRK_Arcelin_ConA 24 261 IPR001220 GO:0030246
Trre12g03896 690 Gene3D - 22 267 - -
Trre12g03896 690 CDD STKc_IRAK 353 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03896 Trre-Chr12 54738456 54740528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03896 21 564 Receptor kinase-like Gene Family AT4G04960 58.333 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre12g03896 Pkinase 4.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03896 - - gmx:100776006 1066.22