LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g03895	ATGGGTTGCATAACTTCCAAGAGTTCAGCTGTGGATGATAGTAGAGAAGGTTTGACAAAGGATTTGGGATCATCTAGAAAAAGGAACTTTGAGAAGAAGGTTTCACGGTCAGATTCGAAGAAAAGGGTTGACGGAGTTTTGGAGAAAGATAAGTTATTGGATGGTATTGGCATGAAAGTTTCATTGATTGACAAGGAAGCTAATAATGGTTCGGTGTGGTTGTATGATGCTCAGAATGAGAAGAAGAAAATGGAGAAACCCGAATTAGCTGTTGTTGTTGATTGTCCGCGTATTGGAAGAGTTCCAAAGGCTTTAGAAGGAGAGCAAGTTGCAGCTGGATGGCCAACTTGGCTTTCTTCTGTTGCTGGTGAAGCTATCAATGGATGGATACCGCGAAGTGCGCATACTTTTGAGAAGTATGATAAAATTGGTGAAGGAACTTACAGCACTGTTTATAAGGCACGTGATTTGATTAACCAAAAGGTCGTTGCCTTGAAGCGGGTACGCTTTGATAATCTTGATCATGAGAGTGTCAAGTTCATGGCCAGAGAAATTATTTTTCTGCGTAGGCTTGACCATCCAAATGTAATAAAGTTGGAGGGCTTGATAACATCGCAGTCGTCTCGCAGCTTGTACCTTGTTTTTGAATATATGGAACACGATCTTACAGGACTTGCAACAGCACCTAGCATTAAGTTTTCTGAACCACAGATTAAATGCTACATGAAGCAGCTTCTTAGTGGATTGGATCATTGCCATAGTCGTGGTATCCTCCACCGTGATATAAAGGGCTCAAATCTTCTCATCGACAATAATGGCATTTTAAAGATTGCAGATTTTGGTTTGGCAAATTTTTTTGATCCCGATCAGAGTGTTCAGTTGACCAGCCGGGTAGTAACTCTGTGGTATAGACCACCAGAACTTTTACTTGGATCCTCAAATTATGGAGTTGCAGTGGATATGTGGAGCACTGGTTGCATACTCGGTGAACTATACTCTGGCAGGCCTATATTGCCAGGAAAAACCGAGGTTGAGCAATTGCATAGGATTTTTAAACTTTGTGGATCACCATCTGTGGACTATTGGAAAAAACTGCGGCTGCCACATTCTGCAGTATTCAAGACTCCACACCATTATAGGAAATGTATTGCCGATACATTTAAAGAATTTCCATCTGCTGCTGCGAGGCTTATAGAGACCCTACTCTCTTTAGATCCTACACTTAGAGGAACAGCAGCTACAGCTCTAAAGAGCGAGTTCTTTTCATCGGAACCCCTTGCTTGCGATCCATCAACTTTGCCAAAATATCTTCCCAGCAAAGAGATTGACACTAAATTGCGGGAAGAATCAAGAGGAAGGCAAGGAGCTCTTGGGGGAAAGGAACAAAAAGTTGGGCCACGAGTTAGACAAGAGAAAGAAACTCAGTCATTTGTCTTATCCAAAGCCAAAGTTGACTCCCGCATTTCAGGACAGCAAGGGCAACGCTTTCCAAACATGGCGTGCCAGAATGAACGGTTCAACCCTCACAGAGTACCTCCTGTATCTGGATTTATGGGTTTTCGACACAAACAGTCAGAAGATGCTAAAAAGACGGTTAATTATTTCTCTGGGCCTCTTTACCAGAGGCCTTCACATTCAGGGTTACTGGTTCCAGATTCGGGCCGACACAAATATGGAAAAGAAGCGAGTGAGAGATTTCTTCCTGTTTCAAATAAAGTCGATTCAAAACCATCTAGAACTTCATTGTCTCGAAATCAAAAAGAAAATCCAGCTTCTTTGAGTCCCCAAGATACAACTCAAGTACAAAAATCTTTAGGGTTGAGTAATGGATCAGAGTCAAGAAGGCGGCATGATAGAAAACGCCATTCTCAGATAGTTGATCTCAGCCAAACAGAAAATGGAAAGGACGGGCATGCATCCGGCGGAAACAATCTCTATATGTCTGGTCCATTGCTGGTTTCGTCAAACAATATGGATCAGATGCTCAAAGAGCGCGATCGGAAGATCCAAGAATATTCAAGGCGAACCAGAAATAAATAG	2040	0.423	MGCITSKSSAVDDSREGLTKDLGSSRKRNFEKKVSRSDSKKRVDGVLEKDKLLDGIGMKVSLIDKEANNGSVWLYDAQNEKKKMEKPELAVVVDCPRIGRVPKALEGEQVAAGWPTWLSSVAGEAINGWIPRSAHTFEKYDKIGEGTYSTVYKARDLINQKVVALKRVRFDNLDHESVKFMAREIIFLRRLDHPNVIKLEGLITSQSSRSLYLVFEYMEHDLTGLATAPSIKFSEPQIKCYMKQLLSGLDHCHSRGILHRDIKGSNLLIDNNGILKIADFGLANFFDPDQSVQLTSRVVTLWYRPPELLLGSSNYGVAVDMWSTGCILGELYSGRPILPGKTEVEQLHRIFKLCGSPSVDYWKKLRLPHSAVFKTPHHYRKCIADTFKEFPSAAARLIETLLSLDPTLRGTAATALKSEFFSSEPLACDPSTLPKYLPSKEIDTKLREESRGRQGALGGKEQKVGPRVRQEKETQSFVLSKAKVDSRISGQQGQRFPNMACQNERFNPHRVPPVSGFMGFRHKQSEDAKKTVNYFSGPLYQRPSHSGLLVPDSGRHKYGKEASERFLPVSNKVDSKPSRTSLSRNQKENPASLSPQDTTQVQKSLGLSNGSESRRRHDRKRHSQIVDLSQTENGKDGHASGGNNLYMSGPLLVSSNNMDQMLKERDRKIQEYSRRTRNK	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g03895	679	MobiDBLite	consensus disorder prediction	440	474	-	-
	Trre12g03895	679	PANTHER	CELL DIVISION PROTEIN KINASE	136	426	-	-
	Trre12g03895	679	SMART	serkin_6	137	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre12g03895	679	CDD	STKc_CDK9_like	137	421	-	-
	Trre12g03895	679	Gene3D	Phosphorylase Kinase; domain 1	124	219	-	-
	Trre12g03895	679	MobiDBLite	consensus disorder prediction	561	679	-	-
	Trre12g03895	679	MobiDBLite	consensus disorder prediction	13	41	-	-
	Trre12g03895	679	Pfam	Protein kinase domain	137	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre12g03895	679	MobiDBLite	consensus disorder prediction	1	41	-	-
	Trre12g03895	679	FunFam	probable serine/threonine-protein kinase At1g54610	220	461	-	-
	Trre12g03895	679	FunFam	probable serine/threonine-protein kinase At1g54610	124	219	-	-
	Trre12g03895	679	SUPERFAMILY	Protein kinase-like (PK-like)	131	427	IPR011009	-
	Trre12g03895	679	ProSiteProfiles	Protein kinase domain profile.	137	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre12g03895	679	MobiDBLite	consensus disorder prediction	573	609	-	-
	Trre12g03895	679	ProSitePatterns	Protein kinases ATP-binding region signature.	143	166	IPR017441	GO:0005524
	Trre12g03895	679	MobiDBLite	consensus disorder prediction	660	679	-	-
	Trre12g03895	679	MobiDBLite	consensus disorder prediction	440	456	-	-
	Trre12g03895	679	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	257	269	IPR008271	GO:0004672\|GO:0006468
	Trre12g03895	679	Gene3D	Transferase(Phosphotransferase) domain 1	220	457	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g03895	Trre-Chr12	54732175	54736380	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g03895	129	464	Core Cell Cycle Gene Families	AT5G10270	48.580	2.30e-109	338

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Trre12g03895		Pkinase	1.7e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g03895	-		K08819	gmx:100775462	971.844