LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g03890	ATGGAGCCTTTGCTACGAGGCGAAAGCAGTGGCTTAAGAAACCGTTCGCGAGGAATAGTTCGCCGTACCGATGCTATCACCTACGGTTCCAATTACGAGAAAGCCGCCGCACTCATCGATCTGGCTGAAGATGGTGTTGGTATACCTGAGCAGCTTCTGGATTCATCAAGCTTTCAAAGTTATTCCAAATATTATTTTATGTTCACTAAATTAGATCTCCTCTGGTCTCTTAGTTATTTTGCTCTGATAATCCTGAATTTTCTGGAGAAACCTCTATGGTGTGAAAAGACCACACATTCTTGCACTGATAGAGAGTATTTCTTTTTGGGAGAGTTGCCATATCTAACTGCTGCAGAATGTATTATTTATGAGGGAATAGTTCTTGTTTTCCTAACCATTCATACTTTCTGTCCGTTATCGTATGAAGGGTCCCCTATATTTTGGAGAAGTCCTATTAATTTATTGAAGGCCTTCTGTTTGTTAGTTATCCTTGTTGATATGCTGGCTTATGCTCTGTATATATCGCCAGTGGCTTTTAATTTTCTACCTTTCAGAATTGCACCTTATATCAGGGTTGTTCTTTTCGTTCTGAATATTAGGCAGCTACGAGAAACTGTCATCATTGTGGCTGGAATGCTTGACACATACTTAAATATCTTGGCTTTGGGGCTTCTGTTTCTTGTTTTTGCAAGTTGGGTGGCTTATGTGATTTTTGAAGATACAATACAGGGGAAAACAGTATTCACTTCCTATAGTGCAACGTTATATCAGATGTTTCTTTTATTTAACACAGACAATAATCCAGATGTTTGGGTTCCTGCATACAAGTCTTCACGTTCGTCTATCCTGTTTTTCATTCTGTTTGTGCTGATTGGAGTCTACTTTGTTACAAACTTGATTCTTGCCGTTGTTTACGATAGTTTCAAGAGTGAGCTTGTAAAACAAGTTTCGGAGATGGATCGTATGAGAAGAGCTATGTTGGAGAAAGCTTTTAATCTCCTAGATACACATAGTGTTGGATATCTCAAGAAAGATCAATGCATTAGGCTCTTTGAGGAGGTGAACAAATACAGGACTTTGCCAAAAATCTCCAATGAAGAATTTGAATTGATATTTGATGAGCTGGATGACACTCATGATGTAAAGATCAACAAAGATGAATTTGCTGATATTTGCAATGCCATTGCTTTAAGATTCCAGAAGGAGGATGTGAGTTCTTACTTTGACTATTTAGTATTCTACCATTCATCCACCTCAAAGAGATTGAAAGCATTCGTAAAGAGCACCATATTTGGATACATAGTGACCTTTGTTCTCATATTGAATCTGGTTGCTGTAATTATTGAGACAACGCTTGACGTAAATGAAAATTCTGCTCAAAAGGCATGGCAAGTGGTTGAGTTCACTTTCGGGTGGATATATGTAATAGAAATGATACTAAAGGTTTACTCTTATGGATTTGAAAACTATTGGCGGGATGGTCAAAATCGCTTTGATTTTGTAATCACAGTGACAATTGCCATTGGAGAAACTATAGATTTTGCTGCACCTGATGATGGTCTGCCATTTTTCACAAATGGAGAATGGATTCGTTACCTCCTTCTTGCAAGAATGTTGAGATTGATAAGGCTCCTAATGTATGTCCAGCGATTTCGAAGTTTCGTGGCAACTTTCTTAACTCTTATACCAAGTTTGATGCCATATCTCGGGACCATATTTTGCATATTGTGTATTTATTGCTCACTTGGTGTCCAGATTTTTGGTGGATTAGTTAATGCTGGAAACCCAGATTTGGAAGCCACGGACCTTGCTGCTAATGACTATTTACTTTTTAATTTCAATGATTATCCAAATGGAATGGTGACGCTATTCAATTTGCTAGTCTCAGAGGTCTGGCAAGAATTGATGGTGAGCTACAAGGATTTAACTGGAACTTCTTGGACCTATGCGTACTTCATTAGCTTCTACTTGATTACTGTTTTGCTGCTTTTGAATTTGATTATTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATAGAGCTTGAGTCATCAGAAAATTCTGATGAAAATGACAAGGAAAATGCGGGTGTTAGATATCCAAGGCGACGAACTCTTGGAACAAAATCACGAAGCCAGAGGGTTGACGCTCTTCTTCATCATATGCTGAGTGCTGAGCTGAAACAAAATCAGCCTTCCAATACATAA	2205	0.3832	MEPLLRGESSGLRNRSRGIVRRTDAITYGSNYEKAAALIDLAEDGVGIPEQLLDSSSFQSYSKYYFMFTKLDLLWSLSYFALIILNFLEKPLWCEKTTHSCTDREYFFLGELPYLTAAECIIYEGIVLVFLTIHTFCPLSYEGSPIFWRSPINLLKAFCLLVILVDMLAYALYISPVAFNFLPFRIAPYIRVVLFVLNIRQLRETVIIVAGMLDTYLNILALGLLFLVFASWVAYVIFEDTIQGKTVFTSYSATLYQMFLLFNTDNNPDVWVPAYKSSRSSILFFILFVLIGVYFVTNLILAVVYDSFKSELVKQVSEMDRMRRAMLEKAFNLLDTHSVGYLKKDQCIRLFEEVNKYRTLPKISNEEFELIFDELDDTHDVKINKDEFADICNAIALRFQKEDVSSYFDYLVFYHSSTSKRLKAFVKSTIFGYIVTFVLILNLVAVIIETTLDVNENSAQKAWQVVEFTFGWIYVIEMILKVYSYGFENYWRDGQNRFDFVITVTIAIGETIDFAAPDDGLPFFTNGEWIRYLLLARMLRLIRLLMYVQRFRSFVATFLTLIPSLMPYLGTIFCILCIYCSLGVQIFGGLVNAGNPDLEATDLAANDYLLFNFNDYPNGMVTLFNLLVSEVWQELMVSYKDLTGTSWTYAYFISFYLITVLLLLNLIIAFVLEAFFAEIELESSENSDENDKENAGVRYPRRRTLGTKSRSQRVDALLHHMLSAELKQNQPSNT	734

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g03890	734	ProSiteProfiles	EF-hand calcium-binding domain profile.	363	398	IPR002048	GO:0005509
	Trre12g03890	734	Pfam	Ion transport protein	429	675	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Trre12g03890	734	Pfam	Ion transport protein	127	310	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Trre12g03890	734	SUPERFAMILY	Voltage-gated potassium channels	429	675	-	-
	Trre12g03890	734	FunFam	Two pore calcium channel protein 1	421	554	-	-
	Trre12g03890	734	Gene3D	-	420	554	IPR027359	-
	Trre12g03890	734	PANTHER	TWO PORE CALCIUM CHANNEL PROTEIN 1	3	731	IPR044581	GO:0005245
	Trre12g03890	734	SUPERFAMILY	EF-hand	317	410	IPR011992	-
	Trre12g03890	734	FunFam	Two pore calcium channel protein 1	555	713	-	-
	Trre12g03890	734	MobiDBLite	consensus disorder prediction	687	711	-	-
	Trre12g03890	734	Gene3D	-	201	311	-	-
	Trre12g03890	734	Gene3D	-	555	710	-	-
	Trre12g03890	734	FunFam	Two pore calcium channel protein 1	201	312	-	-
	Trre12g03890	734	Gene3D	-	312	395	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g03890	Trre-Chr12	54681249	54698742	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g03890	2	734	Ion Channels	AT4G03560	65.986	0.0	1016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g03890	K16900		-	gmx:100806160	1145.57