Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03888 ATGGCTTCAGGACCATCAATTCACGGTAACTACATCTCCGAGGGACATAATTTAGGTTCTGATGATGTTTTTTGTTCATACGATGATTATACCAACGAGGATTCTTCTTGTGCCACTCATATCGATTCTAGTAAGGATTTTCACATATCAAGGATGACAAAAACATCAACATTTCCTGCTACTGTCATTAGTTCACCTGAAGGTTCTTTAAGCCAAGATGTTATTGCAACAACTGTTGAGAAGAGTATGAAAACATGTACTGATAATCTTATGCGGTTTCTTGAGGGAATTAGTTCAAGGCTATCACAATTGGAATTATATTGTTACAATGTTGACAAATCAATTGGAGAAATGAGATCTGAGTTAACTAGTGACCACGAGGAGGCAGATTTAAAACTCAAATCTCTTGACAAACACATGCAGGAAGTACACAGGTCACTACAAATTTTAAGAGACAAACAAGAGCTAGTTGAGACTCAGAAAGAATTAGCCAAACTTCAACTTGCTCGGAAAGGATCACCTTCCTCAAGCCACTCGCAGTCGAATGAGGAGAAATTTTCCCCTCCTGCTTCCATAGAACAGAAAAGAACTGATAATGCATCTCCTACATCATCTGATCCGCATAACCAGCAGCTAGCTCTTGCCCTTTTTCATCAAGTTGCCTTCCAGCAACCGCCCATACCCCCGTCATCTCAAGCACCCCCCCCAACTGTGACCCAAACCACACAACAACCTCATTATTACATGCTGCCTGCGCCTTCACCCAACCCGCCAGCCACATCACAACTTCCTCAGAATCAGTATTTTCCTACTGATCCACAGTATCAATATCATCATCCACCAACATCATCTCAAGTAACCCAGTCCCCGACTGTGCAACAATTTTCTCAGTATCAGCAGCCACAACAGCAATGGCCTCAACAGTTACCTCAGCAGGTACAACCTCTGCAATCACCCTCAATGCACTCTCAAATGAGACCTCCATCAGTGAATTCTTACGCTCCGTACCTTACAAGCCAAGCTTCAAGTCCACTTCCCACCGACACATTGCCGAACAGCATGCCAATGCAAAAGCCATATTCAGGGATTCCAACCCAAATCAAGGGCCATTATCCATCCCAACCAGGTAATCCGTATGGAACTAGTGGGGTCCACACCACGCCTCCTCCTGCGAGTGCATACATGATGCATGAAGGTGAGGGTGGCAGAGTAAATTACGCTCCACAACCTCCTCAATTTGCTCAAGGCGGATATCCTCCTCAAAGTGCCTCCCTTCAGAATCCTGCACCGCATAATCTAACGGTCAGAAATCCTAGCCAGCCACAACTTGTCCGCAGCCATCCTTACAGTGAGTTGATTGAGAATTTCGTGAGTATGGGAGTTAGAGGCGATCTTGTGGTAAGCGTTATTCAGAGGATGGAGGAAACTGGACAACCTGTAAATTTTAACTCTGTACTTGAAAGGTTGAATGTACATAGTTCACTGGGTCCGCAGAGGGGATGGTCAGGGTGA 1512 0.4471 MASGPSIHGNYISEGHNLGSDDVFCSYDDYTNEDSSCATHIDSSKDFHISRMTKTSTFPATVISSPEGSLSQDVIATTVEKSMKTCTDNLMRFLEGISSRLSQLELYCYNVDKSIGEMRSELTSDHEEADLKLKSLDKHMQEVHRSLQILRDKQELVETQKELAKLQLARKGSPSSSHSQSNEEKFSPPASIEQKRTDNASPTSSDPHNQQLALALFHQVAFQQPPIPPSSQAPPPTVTQTTQQPHYYMLPAPSPNPPATSQLPQNQYFPTDPQYQYHHPPTSSQVTQSPTVQQFSQYQQPQQQWPQQLPQQVQPLQSPSMHSQMRPPSVNSYAPYLTSQASSPLPTDTLPNSMPMQKPYSGIPTQIKGHYPSQPGNPYGTSGVHTTPPPASAYMMHEGEGGRVNYAPQPPQFAQGGYPPQSASLQNPAPHNLTVRNPSQPQLVRSHPYSELIENFVSMGVRGDLVVSVIQRMEETGQPVNFNSVLERLNVHSSLGPQRGWSG 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03888 503 MobiDBLite consensus disorder prediction 261 349 - -
Trre12g03888 503 Coils Coil 149 169 - -
Trre12g03888 503 MobiDBLite consensus disorder prediction 247 349 - -
Trre12g03888 503 PANTHER RECEPTOR-LIKE KINASE, PUTATIVE (DUF1421)-RELATED 13 503 - -
Trre12g03888 503 Pfam UBA-like domain (DUF1421) 449 493 IPR010820 -
Trre12g03888 503 MobiDBLite consensus disorder prediction 167 208 - -
Trre12g03888 503 MobiDBLite consensus disorder prediction 416 431 - -
Trre12g03888 503 MobiDBLite consensus disorder prediction 170 208 - -
Trre12g03888 503 MobiDBLite consensus disorder prediction 407 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03888 Trre-Chr12 54668564 54671137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03888 59 194 Trihelix Transcription Factor Family AT5G14540 32.353 2.11e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03888 - - aip:107610486 556.599