Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03877 ATGTTGAACCGTGCAACCCCTGATTCTAGTAGATTTGGTTCTAATGGCTTTGAATGCAACATATGCTTGGAGAATGTGCAAGAACCAGTGGTAACTCTCTGTGGTCATCTCTATTGTAGGCCATGTATTGACAAATGGCTTACTACCCAAAATGATAGCACCTCATCATCATCTACAAATAATAGGAACTCACCACCACAATGTCCAGTTTGCAAAGCAAAAATTTCAAAACAGTCCCTTGTTTCAATATATGCAGGTCGAGGTCGAGGTCGTGGCCAAACAACATCAACTTCTTCTAATGACAAACCTCATCATCAAGAAGGGATTCTTATACACGACCGGAACTTCGTACCACCACCAAAAACACGACTGGAATTTCGTTCAGAAAAAGCGCCAGAGGTTCCTCGTTGGGATATACCTGTGAGAGATCCTTGTCAGGATAGATTGGAGAGGTTGGAGAATATGATGGAACAAATGATGATATCTCAGAGACAAGCACACGGTCGCCTTGAGCACGGGCTGCATGTTCTCTATGAGATAGTGCAGCATCCAAGATTGAAACTCAAATCCATATTTCACACAGACATTTTTGATTTGGAAATGCTCAAGTTACTATAA 618 0.4175 MLNRATPDSSRFGSNGFECNICLENVQEPVVTLCGHLYCRPCIDKWLTTQNDSTSSSSTNNRNSPPQCPVCKAKISKQSLVSIYAGRGRGRGQTTSTSSNDKPHHQEGILIHDRNFVPPPKTRLEFRSEKAPEVPRWDIPVRDPCQDRLERLENMMEQMMISQRQAHGRLEHGLHVLYEIVQHPRLKLKSIFHTDIFDLEMLKLL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03877 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 86 IPR013083 -
Trre12g03877 205 SUPERFAMILY RING/U-box 14 78 - -
Trre12g03877 205 SMART ring_2 19 71 IPR001841 -
Trre12g03877 205 MobiDBLite consensus disorder prediction 89 104 - -
Trre12g03877 205 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 133 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre12g03877 205 MobiDBLite consensus disorder prediction 85 105 - -
Trre12g03877 205 Pfam Zinc finger, C3HC4 type (RING finger) 19 71 IPR018957 GO:0046872
Trre12g03877 205 ProSitePatterns Zinc finger RING-type signature. 34 43 IPR017907 -
Trre12g03877 205 ProSiteProfiles Zinc finger RING-type profile. 19 72 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03877 Trre-Chr12 54593150 54593767 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03877 8 108 C3H Transcription Factor Family AT4G28270 44.660 2.53e-24 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03877 K10666 - mtr:25487651 110.538