Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre12g03877 | ATGTTGAACCGTGCAACCCCTGATTCTAGTAGATTTGGTTCTAATGGCTTTGAATGCAACATATGCTTGGAGAATGTGCAAGAACCAGTGGTAACTCTCTGTGGTCATCTCTATTGTAGGCCATGTATTGACAAATGGCTTACTACCCAAAATGATAGCACCTCATCATCATCTACAAATAATAGGAACTCACCACCACAATGTCCAGTTTGCAAAGCAAAAATTTCAAAACAGTCCCTTGTTTCAATATATGCAGGTCGAGGTCGAGGTCGTGGCCAAACAACATCAACTTCTTCTAATGACAAACCTCATCATCAAGAAGGGATTCTTATACACGACCGGAACTTCGTACCACCACCAAAAACACGACTGGAATTTCGTTCAGAAAAAGCGCCAGAGGTTCCTCGTTGGGATATACCTGTGAGAGATCCTTGTCAGGATAGATTGGAGAGGTTGGAGAATATGATGGAACAAATGATGATATCTCAGAGACAAGCACACGGTCGCCTTGAGCACGGGCTGCATGTTCTCTATGAGATAGTGCAGCATCCAAGATTGAAACTCAAATCCATATTTCACACAGACATTTTTGATTTGGAAATGCTCAAGTTACTATAA | 618 | 0.4175 | MLNRATPDSSRFGSNGFECNICLENVQEPVVTLCGHLYCRPCIDKWLTTQNDSTSSSSTNNRNSPPQCPVCKAKISKQSLVSIYAGRGRGRGQTTSTSSNDKPHHQEGILIHDRNFVPPPKTRLEFRSEKAPEVPRWDIPVRDPCQDRLERLENMMEQMMISQRQAHGRLEHGLHVLYEIVQHPRLKLKSIFHTDIFDLEMLKLL | 205 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre12g03877 | 205 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 86 | IPR013083 | - | |
Trre12g03877 | 205 | SUPERFAMILY | RING/U-box | 14 | 78 | - | - | |
Trre12g03877 | 205 | SMART | ring_2 | 19 | 71 | IPR001841 | - | |
Trre12g03877 | 205 | MobiDBLite | consensus disorder prediction | 89 | 104 | - | - | |
Trre12g03877 | 205 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 13 | 133 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Trre12g03877 | 205 | MobiDBLite | consensus disorder prediction | 85 | 105 | - | - | |
Trre12g03877 | 205 | Pfam | Zinc finger, C3HC4 type (RING finger) | 19 | 71 | IPR018957 | GO:0046872 | |
Trre12g03877 | 205 | ProSitePatterns | Zinc finger RING-type signature. | 34 | 43 | IPR017907 | - | |
Trre12g03877 | 205 | ProSiteProfiles | Zinc finger RING-type profile. | 19 | 72 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre12g03877 | Trre-Chr12 | 54593150 | 54593767 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre12g03877 | 8 | 108 | C3H Transcription Factor Family | AT4G28270 | 44.660 | 2.53e-24 | 93.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre12g03877 | K10666 | - | mtr:25487651 | 110.538 |