Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03876 ATGGTCGCCGGAACTGAGAATAAGGAGATGTTACGATTTCTGATAGTGAGGGAGAAGACAGATAGACACTGGAAACTTGATAGAAACAACAACACTTTTTCACTCCTCCTATATATTCTCTTTATCATCTTCTTTCTTCTTCCTTTCATTCATTCATTCCGTTCCTCCGCCAACGGTTTTATAATTTTCACAAACATCTCTTCTCTCTTTTCCCTTCAACACACACCATCATTTCTCATCTCTATTCAGGTACTATCGGTCGAAGAACACATTGTAAGACAAAAGGAAATGGCTTTTAATCAGTATTTTGAGGAGGGTTTGAACCAAATTGAGTCCTCGGAAGATAAACCATCTCAGGAAATGTGGAAATGTGCGAGTGCTGAAGCAATTTCGGGCTCTAGCGGTTTTGATTGCAACATATGCCTTGAGTGTGTGCAAGATCCGGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCGTGCATTTACAAGTGGCTTAATTTCCATGGAGAAATTGAAGATAAGCGAATGGAGAAGCCACAATGTCCAGTATGCAAATCAGAAATTTCAAAGTCTTCTCTTGTTCCTCTCTATGGCCGCGGCCAAACTACACCACCTTCCAAAGGCAATGCTCAACAACTAGCGAGTGTGATACCACCGAGACCGCTCGGTCCATCATCGTGGATGACTAACTTACCAAGATCACTTGATTCCGCATCTGTTTCGCAGCATACATCTCAGGTTTATCATCCTCATTATCTTAACCATACTCAAAGATACGCTTCACCGATGCTTAACACAAGTGGTTTAATGACCAATCCATTGGATACAACATATGGTGTCTTTGGTGAGATGATATATGCAAGGATCTTTGGTAACCAAGTGACAAACATATATACATACCCGAATTCGTATAATCTTTCAGGAATTAGTAATCCAAGGATGAGAAGGCATTTGATGCGAGCTGATAGGTCGCTTGGTAGAATCTGTTTCTTCCTTTTTTGTTGCGCAGTTTTGTGTCTTCTCTTGTTTTGA 1035 0.4116 MVAGTENKEMLRFLIVREKTDRHWKLDRNNNTFSLLLYILFIIFFLLPFIHSFRSSANGFIIFTNISSLFSLQHTPSFLISIQVLSVEEHIVRQKEMAFNQYFEEGLNQIESSEDKPSQEMWKCASAEAISGSSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFHGEIEDKRMEKPQCPVCKSEISKSSLVPLYGRGQTTPPSKGNAQQLASVIPPRPLGPSSWMTNLPRSLDSASVSQHTSQVYHPHYLNHTQRYASPMLNTSGLMTNPLDTTYGVFGEMIYARIFGNQVTNIYTYPNSYNLSGISNPRMRRHLMRADRSLGRICFFLFCCAVLCLLLF 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03876 344 ProSitePatterns Zinc finger RING-type signature. 153 162 IPR017907 -
Trre12g03876 344 Pfam Zinc finger, C3HC4 type (RING finger) 138 185 IPR018957 GO:0046872
Trre12g03876 344 ProSiteProfiles Zinc finger RING-type profile. 138 186 IPR001841 -
Trre12g03876 344 SMART ring_2 138 185 IPR001841 -
Trre12g03876 344 SUPERFAMILY RING/U-box 134 198 - -
Trre12g03876 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 200 IPR013083 -
Trre12g03876 344 CDD RING-HC_AtRMA-like 136 187 - -
Trre12g03876 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 111 341 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03876 Trre-Chr12 54585150 54588136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03876 109 344 C3H Transcription Factor Family AT4G28270 37.190 7.66e-44 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03876 K10666 - gmx:100785491 308.145