Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03872 ATGAAGCAGCACCACCGTGTCTCCGCCGCCATGTTTCTTTTAAGCCTTTGCTTCATACTTGCGCAGGGACTGAGTCAGCACAGTGCTCACCTTGATACACATTGGTATCCTGGTACTGCAACTTGGTATGGTGAAGCTGAGGGAGATGGTAGCACAGGAGGGGCGTGTGGCTATGGTAGTTTGGTGGATGTGAAGCCGTTAAAGGCAAGAGTAGGGGCAGTGGGGCCAGTGTTGTATAAGAAGGGAGGAGGGTGTGGGGAGTGTTATAAGGTGAAGTGTTTGGACCATAGCATATGTGCGAAGCGGGCAGTGACGGTTATAATAACAGACGAGTGTCCTGGCTGTCCGTCTGATCGAACACATTTCGACCTTAGTGGTGCTGCTTTTGGTCACATGGCTGTTGCAGGCGAGAATGGTCAACTTAGAAATAAAGGTGAAATCCCAATTGTTTACCGAAGAACAACATGTGTATACACTGGCAAAAATATTGCTTTCCAAGTTAATGAAGGCTCCACACCATATTGGTTGTCACTTTTAGTGGAGTTTGAAGATGGAGATGGGGACATAGGCTCCATGCACATACAAGAAGCTGGGTCTAGTGAGTGGCTACAAATGAATCATCTATGGGGTGCAAATTGGTGCATTATTGCTGGACCTTTGAAAGGACCTTTTTCTGTTAGACTAAGTACATCTAGTGGGAGAGGCCTTACTGCTAAAGATGTTATTCCATCTAATTGGTCTCCAAAATCAACTTATACCTCTCGCTTAAATTTCTCTCCTTAA 783 0.4585 MKQHHRVSAAMFLLSLCFILAQGLSQHSAHLDTHWYPGTATWYGEAEGDGSTGGACGYGSLVDVKPLKARVGAVGPVLYKKGGGCGECYKVKCLDHSICAKRAVTVIITDECPGCPSDRTHFDLSGAAFGHMAVAGENGQLRNKGEIPIVYRRTTCVYTGKNIAFQVNEGSTPYWLSLLVEFEDGDGDIGSMHIQEAGSSEWLQMNHLWGANWCIIAGPLKGPFSVRLSTSSGRGLTAKDVIPSNWSPKSTYTSRLNFSP 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03872 260 SUPERFAMILY Barwin-like endoglucanases 29 160 IPR036908 -
Trre12g03872 260 PANTHER EXPANSIN-B3 16 258 - -
Trre12g03872 260 FunFam Beta-expansin 3 158 259 - -
Trre12g03872 260 Pfam Expansin C-terminal domain 163 243 IPR007117 -
Trre12g03872 260 FunFam Expansin B3 21 157 - -
Trre12g03872 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 254 IPR007117 -
Trre12g03872 260 Gene3D - 21 156 IPR036908 -
Trre12g03872 260 SMART dpbb_1 71 151 IPR007112 -
Trre12g03872 260 Pfam Lytic transglycolase 76 151 IPR009009 -
Trre12g03872 260 SUPERFAMILY PHL pollen allergen 161 254 IPR036749 -
Trre12g03872 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 161 IPR007112 -
Trre12g03872 260 CDD DPBB_EXPB_N 35 156 - -
Trre12g03872 260 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Trre12g03872 260 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Trre12g03872 260 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Trre12g03872 260 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Trre12g03872 260 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Trre12g03872 260 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Trre12g03872 260 PRINTS Major pollen allergen Lol pI signature 181 196 IPR005795 GO:0005576|GO:0019953
Trre12g03872 260 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576|GO:0019953
Trre12g03872 260 PRINTS Major pollen allergen Lol pI signature 210 227 IPR005795 GO:0005576|GO:0019953
Trre12g03872 260 PRINTS Major pollen allergen Lol pI signature 133 148 IPR005795 GO:0005576|GO:0019953
Trre12g03872 260 PRINTS Major pollen allergen Lol pI signature 111 126 IPR005795 GO:0005576|GO:0019953
Trre12g03872 260 PRINTS Major pollen allergen Lol pI signature 230 247 IPR005795 GO:0005576|GO:0019953
Trre12g03872 260 Gene3D - 158 259 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03872 Trre-Chr12 54542052 54544741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03872 11 196 Expansin Gene Family AT4G28250 64.583 4.86e-89 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03872 K20628 - gmx:100780112 448.743