Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03870 ATGGCTCGGGCAGGACAAACGAGACCTCGTGTTCCTCTCATTAGTATAAAAGTTAACCTTTCCGGGGTCTTTATGGATGAAACATATGTCGGATTCTGCGCAGCCACAGGGCGATTAATAGAGAGTACTAAGATTCTTGCTTGGAGCTTTAGTAATACAAATTTTTCAATTGGTGATGCTTTAGTGACAAACAACTTGCCTTCATTTGTTCCTCATAATGGATGGTTTTTTGGAGTGAAGGCTATAGTTGTAGGAGTCATTGGTGTTGTCGGTGTTTTAATCATCGGTTGCGGTTGTGTAGTTTTTTTCATCCTATATAGAGAGGAAAAGGAAAAAGAAGAAATTGATGAGTGGGAACTAGAGTATTGGCCACATAAAATTTGTTTCCAAGATATTCATACAGCAACAAGAGGATTCTCTAAAGAGAATGTGGTTGTTGTACGAGGGAACAAAAGTGTATATAAAGGTGTTTTGCAAGGAGTTGAAGTTGCGGTCAAGAGAATCCCTCAAGAAAGAGAAGGGATGAGAGAGTTTTTGGCAGAGGTTTCAAGCCTAGGAAGATTGAAACACAAAAATTTAGTAGGACTTATAGGTTGGTGCAAAAAAGATAAGGGAAACTTGATTCTTGTTTATGACTTCATGAATAATGGAAGTTTAGACAAATGGATTTTTGAGTGTGAAGAAGGAAAGATGCTAACACGGGAAGAGAGGATTCAAGTTTTGAAAAATGTAGCCGAAGGGATTCTATACCTGCACGAAGATTGGGAAGTTAAGGTCTTGCATAGGGATATTAAAGCAAGTAATGTTCTACTTGACAAGGACATGAATGCTAGATTGGGGGATTTTGGTTTGGCTCTTATGCATGAGCATCATGGATAA 879 0.3857 MARAGQTRPRVPLISIKVNLSGVFMDETYVGFCAATGRLIESTKILAWSFSNTNFSIGDALVTNNLPSFVPHNGWFFGVKAIVVGVIGVVGVLIIGCGCVVFFILYREEKEKEEIDEWELEYWPHKICFQDIHTATRGFSKENVVVVRGNKSVYKGVLQGVEVAVKRIPQEREGMREFLAEVSSLGRLKHKNLVGLIGWCKKDKGNLILVYDFMNNGSLDKWIFECEEGKMLTREERIQVLKNVAEGILYLHEDWEVKVLHRDIKASNVLLDKDMNARLGDFGLALMHEHHG 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03870 292 ProSiteProfiles Protein kinase domain profile. 139 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03870 292 Pfam Legume lectin domain 5 54 IPR001220 GO:0030246
Trre12g03870 292 Gene3D Phosphorylase Kinase; domain 1 103 213 - -
Trre12g03870 292 Pfam Protein kinase domain 152 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03870 292 SMART serkin_6 139 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03870 292 Gene3D - 1 75 - -
Trre12g03870 292 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 100 213 - -
Trre12g03870 292 PANTHER - 9 291 - -
Trre12g03870 292 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Trre12g03870 292 SUPERFAMILY Concanavalin A-like lectins/glucanases 7 202 IPR013320 -
Trre12g03870 292 Gene3D Transferase(Phosphotransferase) domain 1 214 292 - -
Trre12g03870 292 SUPERFAMILY Protein kinase-like (PK-like) 116 290 IPR011009 -
Trre12g03870 292 FunFam Os07g0541700 protein 214 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03870 Trre-Chr12 54517899 54518777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03870 1 290 Receptor kinase-like Gene Family AT4G04960 55.921 2.30e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre12g03870 Pkinase 1.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03870 - - gmx:100776006 440.654