Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03869 ATGATGGTGTTGTCTGCTTTCTTGCTTGCAGAGAAGGAGAAGATCTGTAGAACATGTATTGTGCTTCCCCTGCAAGAGTATGCCGAGTTGAAGACATGTTTGAGTCATGTTCCTGAAGTTTCCAACAAAGAAGAAACTGCTGGTGGGGTATTGGAGAATTGGCCACATAGACTTGAGTTTGTTTCATATATGAAAGGAATTCCAAGCAAAGCTAAAAATTTACCGATGAATTTGTTATTAGGAAAGCTGTATCGAATTTCACATGGCCGAGCTGTTGTTGCTATTTACAAAGAATGCCTAAGACATTGCCCTTTTATACTTGAGGCTATCACTGCTTTATCAGAACTAGGATCTACTGCAAAGGACATAATTTCATTGTTTCCTCAGCATGAAGTTCGACTGTCATCCTTCTTTCTGGAAAACAAGGGTCCCATAATTGCCGTCGAATCTATTGTTGGAGGTTATTGTATTATGAGGTTGGATAATATAGAAGAAGCTAGCAAGGATACACCTGGCAGAAGTTTCTATTATGCAATGGAGCCTCTTTGCCACATGTGTCTTTTTTTGCAGTGGTCACTGCCAAGAGATACTTGGAAGATGTTTTGGCCCACAAACAGGCTATTCCCTTCAGACGTTTCTGTCGCGGTGTTGGTAGGACTGCACAAGCTAAGAATAGACATTCCAATGGGCAAGAATTCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTGGATGCTCTGTATGTTTCTCATATCCAGGTCAATCAAGCTCAAAAGCAAAGATGTCCCTACATGTCATCTCCATGCCTCATTGAGCTGATATTGTCCGAGAAGGAAGAGGCTGTCCAGAAAGAGGTATTCATCTGTCACTTTTCTGTAATAACCTGA 888 0.4122 MMVLSAFLLAEKEKICRTCIVLPLQEYAELKTCLSHVPEVSNKEETAGGVLENWPHRLEFVSYMKGIPSKAKNLPMNLLLGKLYRISHGRAVVAIYKECLRHCPFILEAITALSELGSTAKDIISLFPQHEVRLSSFFLENKGPIIAVESIVGGYCIMRLDNIEEASKDTPGRSFYYAMEPLCHMCLFLQWSLPRDTWKMFWPTNRLFPSDVSVAVLVGLHKLRIDIPMGKNSESNAEVKGLDVDALYVSHIQVNQAQKQRCPYMSSPCLIELILSEKEEAVQKEVFICHFSVIT 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03869 295 Gene3D Ribosomal protein L22/L17 228 281 IPR036394 GO:0003735|GO:0005840|GO:0006412
Trre12g03869 295 PANTHER 60S RIBOSOMAL PROTEIN L17 229 285 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trre12g03869 295 SUPERFAMILY Ribosomal protein L22 231 278 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03869 Trre-Chr12 54483000 54486612 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03869 231 285 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 70.769 4.97e-22 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03869 K03354 - gmx:100808673 117.472