Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03868 ATGGCTGCAGCTAAGAACAGTGGAAAATTCAATAAAGATTTTGGTGATGAAACTCACAACAATCACAACAAGGTTATACAAATTGGTGAAAGCCAAATTAATTGGGAGATTGAAAAAGGAAAAAATGTTGAATTAAGCTCTGCTCAAAAGTATCATTGGAAGCCCGTTTTTGATGAAGCTTCTATTTCACATAATAGACCTTTCAAGAAAAGTAAAAGCCCTGAACGTGAAAATCAAAATCATAATCAAAATCAATTTTCACCTTTCTCTGTTCCTTCTTCATCTTCTTCTTCATCTTCTTCTTCATGTTCATCTTCAAGACTTGTTTTTCCTTTTGCTTTTGATAATACTTCACAACAATTTGGTACCAACAACAATTTACCTTTTTACCCTTATCCACCACCTACACAAAACCAAAACCAACAGCAACAACAACAAATGATATCTTTTGGGTCACAATCACAACAACAACAAAACAATATTGTTTCATATCCACAAATTTTGTCTCAACAACATCATCAACAGCTTCTTCAATATTGGAGTGATGCATTGAATCTAAGTCCAAGAGGAAGAATGTTAATGATGATGAACAACAATAATAATAGGTATTTGGGGCAATATGGTAATAATAATGGTCCAATGTTTAGGCCTCAAGTTCAACCTATAAGTACTACAAAACTCTATAGAGGAGTTAGACAAAGACATTGGGGAAAATGGGTTGCTGAAATTCGTCTACCTCGAAATAGAACTCGTCTCTGGTTAGGTACATTTGATACTGCCGAAGATGCTGCTTTAGCCTATGATCGCGAGGCGTTCAAGTTAAGAGGAGAAAATGCAAGACTCAATTTTCCTGAACTTTTTCTCAACAAAGATAAAGATAAAGATAAAGATAAAGAAAAAGAAAAATCACCATCTCCATCACCACCTCCAACAACAACAGATTCGTCTGTTACTTCTCCGTCAAGTAACACCGTGACAAAGCAGCCGGAGCCTCCACCGATGCAGACACTTCCAATAGAAGAGTCTAATGAGAATGACTCCGGAATTGGATCGTGTGATGCTACGGTGAGTGATGGTTTAGAAGGAGTTTCACAGTCACAAGAATTGGTTTGGAGTGAAATGTCAGCATGGTTTAATGCTATTCCAGCTGCTTGGGGTCCAGGAAGTCCTGTTTGGGATGATAATCTTTTTCCACAGTCACAAACTCCTTTTTCCAATCTCAACCAACATGAAGAATTCAATGATTTTGATCCTCAGATAGGGTCAGGTTCTTCTTCCATTAGACCTTTCTTTTGGAATCATGATCAGAATTAA 1314 0.3683 MAAAKNSGKFNKDFGDETHNNHNKVIQIGESQINWEIEKGKNVELSSAQKYHWKPVFDEASISHNRPFKKSKSPERENQNHNQNQFSPFSVPSSSSSSSSSSCSSSRLVFPFAFDNTSQQFGTNNNLPFYPYPPPTQNQNQQQQQQMISFGSQSQQQQNNIVSYPQILSQQHHQQLLQYWSDALNLSPRGRMLMMMNNNNNRYLGQYGNNNGPMFRPQVQPISTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPELFLNKDKDKDKDKEKEKSPSPSPPPTTTDSSVTSPSSNTVTKQPEPPPMQTLPIEESNENDSGIGSCDATVSDGLEGVSQSQELVWSEMSAWFNAIPAAWGPGSPVWDDNLFPQSQTPFSNLNQHEEFNDFDPQIGSGSSSIRPFFWNHDQN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03868 437 MobiDBLite consensus disorder prediction 124 154 - -
Trre12g03868 437 FunFam Ethylene-responsive transcription factor 2 226 285 - -
Trre12g03868 437 CDD AP2 226 286 IPR001471 GO:0003700|GO:0006355
Trre12g03868 437 Pfam AP2 domain 228 276 IPR001471 GO:0003700|GO:0006355
Trre12g03868 437 Gene3D AP2/ERF domain 227 285 IPR036955 GO:0003700|GO:0006355
Trre12g03868 437 PRINTS Ethylene responsive element binding protein signature 228 239 IPR001471 GO:0003700|GO:0006355
Trre12g03868 437 PRINTS Ethylene responsive element binding protein signature 250 266 IPR001471 GO:0003700|GO:0006355
Trre12g03868 437 MobiDBLite consensus disorder prediction 338 358 - -
Trre12g03868 437 MobiDBLite consensus disorder prediction 136 154 - -
Trre12g03868 437 SMART rav1_2 227 290 IPR001471 GO:0003700|GO:0006355
Trre12g03868 437 MobiDBLite consensus disorder prediction 78 97 - -
Trre12g03868 437 MobiDBLite consensus disorder prediction 286 358 - -
Trre12g03868 437 MobiDBLite consensus disorder prediction 62 77 - -
Trre12g03868 437 SUPERFAMILY DNA-binding domain 227 285 IPR016177 GO:0003677
Trre12g03868 437 ProSiteProfiles AP2/ERF domain profile. 227 284 IPR001471 GO:0003700|GO:0006355
Trre12g03868 437 MobiDBLite consensus disorder prediction 286 304 - -
Trre12g03868 437 MobiDBLite consensus disorder prediction 1 25 - -
Trre12g03868 437 MobiDBLite consensus disorder prediction 62 97 - -
Trre12g03868 437 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 30 394 - -
Trre12g03868 437 MobiDBLite consensus disorder prediction 314 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03868 Trre-Chr12 54465220 54466533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03868 1 400 AP2-EREBP Transcription Factor Family AT2G20880 39.709 4.22e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre12g03868 AP2 3.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03868 - - psat:127086869 561.992