Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03862 ATGAATAACTACAACATTTTGCTTGCATGTCCAGCAAAAACTTCCTTTGATCTCTGCCACTCGGCAACTATAATGTGGCAGTGGTCTTTGATGCTCAAGGGGGATTTTACCGGAAAACATTTCATGTTTCCTCCTGACTGGTATGGAGACTTGAAAGTGCCTCGTGAAAACCCCTTCTCTGCTGCTAAGGTGCCCACCTCTTCACAAAGTGCAGAGATCCACATGCCTTCCTCGGACATAAAATTAGGCGAAGTTCCAAAGTCAGTTTCTAGACAGCAACCTCACTGCAAGCAACTCAAGGAAGATAAGGTTAGCGTTTCGGTATGGTGGGACTTCGACTACTGTGGTGTGCCTTCCGGCGTTAGTGTTTCGAAGATAGCACCTTCAATCACGGGAGCCCTTAGAACTAACGGGATTAACGGCCCTATTGATTTTCGTGCTTATGGTGATGTTTCTCATTTTTCAAAGTTCGAACAGACAACACTTTCCTTAACCGGCATTCACCTATGCAACATTACAGATGAAATGAAGAAGAATAGAAAGAGGAAGAAGACCTGTGACTATCTTTTCCTTGATCTTGCAAACTGGGTTTTCAATAATCCTCCGCCCTTTCACCTCTTTATTATTTGTGGTGATGTGAGCATCAATGGCTTATGGATGTTGCACGACTTAAGAATGAGTAACTACAATATCTTGGTTGCATGTCCAGGAAGGACTTATGATGTTCTCCGCAGTGCAACAACTATAATGTGGCACTGGTCTTCGATTCTCAAAGGGGAAGATCTTACTGGAAAACATTTTAACTATCCTCCTGATGGACCGTTTGATTCGTGGTATGGAGATTCGAGGGTGAATCTTGAAAACCCCTTCTCAGCTGCTGACGGGTCCACATCCTCACAAGCGGAGATACTCGAATACATAGAGTCAGGTGAATTGTCAAAGGTGACTCTTGAAAACCCCTTCTCAACTGCTGAGGAGTCCACGTATTCACAAAATGCGGAGATCCATGAACCTTCCTCGGACATACAATCAAGTGAAGTTCCAGAGTCAGTTTCTAGACAAGTTAAGAATAATAAGCAGAGGGATAGTACCTCAACTCAAAAGCGTATTGACACAAGTAGAATTTTAGCATGGAATACCTTCTCAATGTAA 1152 0.4323 MNNYNILLACPAKTSFDLCHSATIMWQWSLMLKGDFTGKHFMFPPDWYGDLKVPRENPFSAAKVPTSSQSAEIHMPSSDIKLGEVPKSVSRQQPHCKQLKEDKVSVSVWWDFDYCGVPSGVSVSKIAPSITGALRTNGINGPIDFRAYGDVSHFSKFEQTTLSLTGIHLCNITDEMKKNRKRKKTCDYLFLDLANWVFNNPPPFHLFIICGDVSINGLWMLHDLRMSNYNILVACPGRTYDVLRSATTIMWHWSSILKGEDLTGKHFNYPPDGPFDSWYGDSRVNLENPFSAADGSTSSQAEILEYIESGELSKVTLENPFSTAEESTYSQNAEIHEPSSDIQSSEVPESVSRQVKNNKQRDSTSTQKRIDTSRILAWNTFSM 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03862 383 PANTHER LIMKAIN B LKAP 1 56 IPR024768 GO:0005777|GO:0010468
Trre12g03862 383 MobiDBLite consensus disorder prediction 323 361 - -
Trre12g03862 383 Pfam NYN domain 106 247 IPR021139 GO:0004540
Trre12g03862 383 CDD PIN_limkain_b1_N_like 106 236 - -
Trre12g03862 383 MobiDBLite consensus disorder prediction 323 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03862 Trre-Chr12 54425476 54427268 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03862 103 259 C2H2 Transcription Factor Family AT5G61190 34.395 4.50e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03862 - - mtr:11420708 253.062