Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03861 ATGTTTCCACTTTTGCGGAAAACCCTCTTGTTTCCCCCTTGTTGTTCCTCTTCATCATCGCAAGTTCGCACTTTTCTTATTCGATTTCCACTGTTTGGGTTCTCATCTCCTCCTCCTCCGCAGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCAGCAACCTAATTCAAGAGATGTCGAGGTTTCGGTATGGTGGAACGTTGACAACTGCAGCGTCCCTTCTGGAGTTAGCTTTTGGAACGTAGCACCTTCAATTATGGCAGCCGTTAGAGCTAACGGGATTAAGGGTAAAATTGATATTCGCGCTTATAGTCATTTTTCGAAGCTTTCAGATGTCGACGAATACGCACTTATGTCAACCGGCATTATTCTCCACTCCTTTAGAGGTGGAACTGACCAGGCCTATCAACAACTTCTTATGGATCTTAATGATTGGGTTTCGAAAAATCCTCCGCCCGTACATCTCTTTTTGATATCTGATGATAGATATGATAGAGTCTTCTCAGGCATATTGCATCGGTTAAGAATGAATAACTACAATATCTTGGTTGCATATCCAGGAAGGGCTTCTGATATTCTCCGCAGTGCAGCAACTATAATGTGGCATTGGTCTTCAATGCTCAAGCGGGAAGATCTTATTGGAAAACATTTCAACTATCCTCCTAATGGCCCGTTTGATTCGTGGTATGGAGACTCAGAGGTGCCTCTTGAAAATCTCTTTTCAGCTATTGAGGAGCCCACATCTTCACAAAATGCAAAGATCCACGAACCTTCTTCAGACACAAAGTTAGGTAAAGTACCAAAGTCAGTTTCTAGGAAGGTTAAGAAGATATTGAGTTCGTACCCAGATGGGATATCCATTGGAGATCTTCGTGCAGAGTTGACAAAGTGTCTGCCTTTGGGTAAACATTTCTATGACCATAAAAGTTTTTCAAACTTTCTAGTATCTATACCACATGTACAACTCCTGTATTTAGCAGACTGTAATTTTGATGTGCATTTGATCCCATCAACTACATTTGATGCTGTTAAGAAGAATAAGCAGAGGGATGGTACCTCAACTCAAAAGCTGCACAGTGAGTGTAAAAATGCAGATGGTATTCCCATATTCCCACTACCGCAGTACAATGAACTCGAGGAAGAGGAAGAAGATAAGGTTAGGGTTTCGGTATGGTGGGACATTGACACCTGTGGCGTGCCTTCCGGAGTTAGCTTTTCGAAGGTAATGCCTTCAGTTATGGGGTCCCTTAGAACTCACGGGATTAAGTGCCCTGTTGATATTCACGCCTATGGTAATCTTTCTCAGCTTCCAGAGATCAACCAAGAAGTTCTTTTCTTGACCGGCATCGATCTCCACCACGTTCCCGGTTCTTATTTCTAA 1383 0.4338 MFPLLRKTLLFPPCCSSSSSQVRTFLIRFPLFGFSSPPPPQPPPPPPPPPPPQQPNSRDVEVSVWWNVDNCSVPSGVSFWNVAPSIMAAVRANGIKGKIDIRAYSHFSKLSDVDEYALMSTGIILHSFRGGTDQAYQQLLMDLNDWVSKNPPPVHLFLISDDRYDRVFSGILHRLRMNNYNILVAYPGRASDILRSAATIMWHWSSMLKREDLIGKHFNYPPNGPFDSWYGDSEVPLENLFSAIEEPTSSQNAKIHEPSSDTKLGKVPKSVSRKVKKILSSYPDGISIGDLRAELTKCLPLGKHFYDHKSFSNFLVSIPHVQLLYLADCNFDVHLIPSTTFDAVKKNKQRDGTSTQKLHSECKNADGIPIFPLPQYNELEEEEEDKVRVSVWWDIDTCGVPSGVSFSKVMPSVMGSLRTHGIKCPVDIHAYGNLSQLPEINQEVLFLTGIDLHHVPGSYF 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03861 460 MobiDBLite consensus disorder prediction 37 58 - -
Trre12g03861 460 CDD PIN_limkain_b1_N_like 62 187 - -
Trre12g03861 460 ProSiteProfiles OST-type HTH domain profile. 267 339 IPR025605 -
Trre12g03861 460 MobiDBLite consensus disorder prediction 37 56 - -
Trre12g03861 460 PANTHER LIMKAIN B LKAP 376 455 IPR024768 GO:0005777|GO:0010468
Trre12g03861 460 SUPERFAMILY Formin homology 2 domain (FH2 domain) 42 147 - -
Trre12g03861 460 CDD PIN_limkain_b1_N_like 388 456 - -
Trre12g03861 460 Pfam NYN domain 388 457 IPR021139 GO:0004540
Trre12g03861 460 Pfam NYN domain 62 198 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03861 Trre-Chr12 54421942 54424685 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03861 386 457 C2H2 Transcription Factor Family AT5G61190 38.889 4.60e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03861 - - mtr:120577422 335.88