Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03856 ATGGGGTGCTGTTTATCGACGAGCAATAGAAGTACTGATGACGCGGGGTCTTCATCTTGTTTAGAAATCGGATTGTGTGGTCAAAAGAAAGCGAGGAGAACATTCTCTAATCATGTTGTCTCTATGCAAAAGTTAACATCCTTACCGAACAGAATATTCAGTAACGGGAAGAGCCGGTCTTCTTGTATATTTACGCAGCAGGGTCGAAAGGGTGTTAATCAGGATGCTATGATTGTATGGGAAGATTTCGTATCAGAAGATGCGATCTTTTGTGGCGTATTTGATGGCCATGGTCCATATGGTCACCTTGTTGCGCGCAAAGTTAGGGATAACTTACCGATAAAATTGCTTTCATTTTTGGATTCATCTGAGTCGAGACGAAGTAAGGCTAGTTTCAAAAAGGAAATAAAGCCCGAAAGTGGAGAGGCGGAGAAGGATTTCTCTGCCGAGGAGGAGGTGAGTACGATGTGGAGAGAAGCTTTCATGAAAGCATACAAGGCTATGGATAAAGAGCTGAAGTCTCATGCAAATTTGGACTGTTTCTGCAGTGGAAGCACATCTGTGACTGTAGTGAAACAGGGTTCAAATTTGTTCATGGGAAATATTGGTGATTCAAGAGCAATCATGGGATCTAAGGATAGAAATGACTCGATGGTGGCGATTCAGCTGACTGTTGATTTGAAACCTGATTTGCCAAGAGAAGCAGAGAGAATTAAGAAGTGTAAGGGTAGGGTATTTGCATTGGAAGATGAACCAGAAGTTCCTAGGGTGTGGTTACCTTTTGATGATGCACCTGGATTGGCAATGGCTAGAGCATTTGGAGATTTTTGCTTGAAGGAGTATGGTGTGATTTCTATACCTGAATTTACGCACCGGCTTCTTACAGATAAAGACCAGTTCATTGTTCTTGCCTCGGACGGGGTGTGGGATGTTTTGAGCAATGAAGAGGTGGTGCAGATAGTATCATCAGCACCGAATCGATCATCAGCAGCGAGGGTTATAGTAGAATCAGCCGCACGAGAGTGGAAACTTAAATATCCGACTTCAAAAATGGACGACTGTGCTGTTGTGTGCCTATTTTTGGACGGGAAAATGAATTCAGAAGAATCTGATTGTGATGAACAATGCTATTCTTCCGCAACCATCCTGAGCAACAGCGGTTTAGGTAATCCAGTTGAGTCAGACGAAGGTCAAAAGTCCGAACCATCTTTGCGAAGGAACTTCACTGTGAGATCCTCAGAAGAAATTCAAAGATGTGTAGGAGCAGAATCTGCTGATGTTGAAGACGGAACATCAACAGCTGAAGATCAAAACTGGTTAGGTCTAGAAGGTGTCACTCGAGTAAACTCACTGGTACAACTTCCTAGATTTTCCGAAGAAAAGCCTAACTCTTGA 1395 0.4308 MGCCLSTSNRSTDDAGSSSCLEIGLCGQKKARRTFSNHVVSMQKLTSLPNRIFSNGKSRSSCIFTQQGRKGVNQDAMIVWEDFVSEDAIFCGVFDGHGPYGHLVARKVRDNLPIKLLSFLDSSESRRSKASFKKEIKPESGEAEKDFSAEEEVSTMWREAFMKAYKAMDKELKSHANLDCFCSGSTSVTVVKQGSNLFMGNIGDSRAIMGSKDRNDSMVAIQLTVDLKPDLPREAERIKKCKGRVFALEDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFTHRLLTDKDQFIVLASDGVWDVLSNEEVVQIVSSAPNRSSAARVIVESAAREWKLKYPTSKMDDCAVVCLFLDGKMNSEESDCDEQCYSSATILSNSGLGNPVESDEGQKSEPSLRRNFTVRSSEEIQRCVGAESADVEDGTSTAEDQNWLGLEGVTRVNSLVQLPRFSEEKPNS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03856 464 SUPERFAMILY PP2C-like 50 363 IPR036457 -
Trre12g03856 464 SMART PP2C_4 49 359 IPR001932 -
Trre12g03856 464 FunFam probable protein phosphatase 2C 52 51 364 - -
Trre12g03856 464 MobiDBLite consensus disorder prediction 387 406 - -
Trre12g03856 464 MobiDBLite consensus disorder prediction 419 438 - -
Trre12g03856 464 Gene3D - 49 363 IPR036457 -
Trre12g03856 464 CDD PP2Cc 59 361 IPR001932 -
Trre12g03856 464 ProSiteProfiles PPM-type phosphatase domain profile. 60 361 IPR001932 -
Trre12g03856 464 PANTHER PROTEIN PHOSPHATASE 58 359 IPR015655 GO:0004722|GO:0006470
Trre12g03856 464 Pfam Protein phosphatase 2C 95 338 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03856 Trre-Chr12 54361785 54363729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03856 1 464 PP2C-type Phosphatase Gene Family AT1G03590 66.170 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03856 - - gmx:100788149 757.673