Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03848 ATGGTAGTAATCGACCACCACGAGACTGACGATCGAAACGCGATTCTCTCCAACGCCGCTACAACTAACGACGCTTCCGACGGCTTTGAAACCGCCAGTGACACCGATCTCGACAGCGACGTCGACGCCAATAACGGCAGTGCAATCAAACAGGAAGAACAAGATAATCTTCAGCAACAGCACCAACTGAGTGACCAACAGAATGAGCAGGTTGATCCTCACAGAATCATTTCTTCTGACGATGCATCGATCAACGATGAAGAACTGATACAGAAAGCATTGGTTCAAGCAAATGAAGCAAAGGCAGAAGGGAACAAACTTTTTGTAGATGCGAAGTATGAGGAGGCATTAACACAATATGAACTTGCTTTACAAGTTGCACCAGACGCGCCTTCATCTGTGGAAATACGCTCAATATGCCATGCAAACCGTGGTGTTTGCTTTCTTAAAATGGGAAAATATGAAAACACAGTTAAAGAATGCACCAAAGCATTAGAATTGAATCCAGTGTATGTCAAAGCTTTGGTAAGAAGAGGAGAGGCCAATGAAAAGCTTGAGCATTTTGAAGAAGCCATTGCTGATATGAAAAAGATCTTAGAAATGGATCCCTCAAATGATCAAGCTGGGAAATCCATTCGCCGGCTAGAACCCCTTGCTGCAGTAAAGCGGGAAAAGATGAAGGAAGAAATGATTGCAAAACTGAAAGATATGGGCAACTCTCTCTTGGGTCGCTTTGGGATGAGCGTAGACAACTTTAAAGCAGTCCAAGATCCAAACACTGGTTCCTATTCTGTCTCATTCCAACAGTAG 810 0.4383 MVVIDHHETDDRNAILSNAATTNDASDGFETASDTDLDSDVDANNGSAIKQEEQDNLQQQHQLSDQQNEQVDPHRIISSDDASINDEELIQKALVQANEAKAEGNKLFVDAKYEEALTQYELALQVAPDAPSSVEIRSICHANRGVCFLKMGKYENTVKECTKALELNPVYVKALVRRGEANEKLEHFEEAIADMKKILEMDPSNDQAGKSIRRLEPLAAVKREKMKEEMIAKLKDMGNSLLGRFGMSVDNFKAVQDPNTGSYSVSFQQ 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03848 269 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 33 269 - -
Trre12g03848 269 SMART tpr_5 172 205 IPR019734 GO:0005515
Trre12g03848 269 SMART tpr_5 138 171 IPR019734 GO:0005515
Trre12g03848 269 SMART tpr_5 97 130 IPR019734 GO:0005515
Trre12g03848 269 MobiDBLite consensus disorder prediction 38 72 - -
Trre12g03848 269 Coils Coil 178 198 - -
Trre12g03848 269 SUPERFAMILY TPR-like 91 210 IPR011990 GO:0005515
Trre12g03848 269 MobiDBLite consensus disorder prediction 14 30 - -
Trre12g03848 269 ProSiteProfiles TPR repeat profile. 172 205 IPR019734 GO:0005515
Trre12g03848 269 Pfam Tetratricopeptide repeat 140 169 IPR001440 GO:0005515
Trre12g03848 269 Coils Coil 49 70 - -
Trre12g03848 269 Gene3D Tetratricopeptide repeat domain 57 236 IPR011990 GO:0005515
Trre12g03848 269 ProSiteProfiles TPR repeat profile. 138 171 IPR019734 GO:0005515
Trre12g03848 269 Pfam Tetratricopeptide repeat 173 205 IPR013105 -
Trre12g03848 269 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03848 Trre-Chr12 54325258 54329995 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03848 84 239 Calmodulin-binding Proteins AT3G25230 35.976 2.81e-14 70.5