Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03847 ATGAGTGAGATGAGATCTACTTCACTGTACAAAAGAATGAAATTGAAAATCTATATACAAGTTCTTTTTGGATTGATGTTGATCTATATAGTACAATTTTCACTTGCTGCTACTAATCCCTCTGATGTTGCTGCAATTAATAGATTATATGCTGCATTGGGCAACCCTGTTCTTCCTGGGTGGGTTGCTAGTGCGGGAGATCCGTGCGGAGAAGCGTGGCAAGGTGTTCAATGTAATGATTCACTCATACAAGAAATAACTCTGATTGGTGCAAATTTGGGAGGAGAACTTGGCGATAGCTTGGGAACGTTTGTTTCTATCAAATCAATATCTCTAAGCAACAACCACATTGGAGGAATTATTCCGACAAGTTTGCCAGCCACCTTGCAAACGCTTTTTCTTTCGGGTAACAATCTCACTGGAAGTATTCCACCCACTTTATCCACATTGACAGAACTTACCGCTTTGTCACTTAATGATAATCAGTTAACCGGGGAAATACCAGATGCCTTTCAGTCTCTTACGCGATTAACCAATCTAGATTTATCTCATAATAATTTGAGTGGAGAATTGCCTCCATCTGTAGAGAGTTTGTCAGCTGTGACGACCTTAGATTTACAGAACAATAACCTGTCTGGGACACTCGATGTTTTACAAGACCTTCCACTGACAGATTTGAACGTTGAGAACAACCAGTTTTCTGGAACAATACCTCCAAAGTTGTTAAGCATCACTAACTTCAGAAAAGATGGAAACCAATTTGACCTTAGTGGTAATGATACTATAGCTCCAGCTCGTCCACCTCATTCTCCAGTAACAACATCACCATCAGGAACTGTGGTTTCTGTGACGCCACCTTCTGGACGTGTACCTAGTGGACGTGTACCTACTAAACCGGCTGATGAACCAACTGCATCAAAAGAATCAGGTTCCGGGAAATCGAAAAAAAACACCAAAAGAGTGATTTGGATAACTATTTCTGGTGTATTGGGGTTTATAATTTTGGCACTGGCACTTGTTCTCTTTCTTCCAAGATGTAGCAAAAGGGAACGAGGCAGAAGAACCTCCAAGCAACATCAGATTGGAGCATATGGAGGCGAAATAACGAACCCGTGGAATAATGGGGCACTAGTCCAACCACCTAGTCAAACTGAGAAAGTACCAAAAGTGGCTGTTGCACGGCCAAAAGAGAATCCTCGAGTAGTGCAAGATGAACCAAAAATGGAAACACTGCCGAAGCTGTTAAATCATGAGATAGATATGAGTGGACTTGGTTTAGATTCAATGCCACCTTCACCCCCACCTCCTCCTCCACCTCCACCTCCTGCTCCACCACTTGCTGCTGAGAAGGTGATTGTCGAGCCAACCACATCCGCTGGAGGGGCCAACATCAATCCTTCCAAAAGAAGTTCTTTTCCGCCGACCTTTGCAAAATCTTTCACCATTGCATCCCTTCAACAGTATACAAATAGCTTTTCTCAAGACAATCTTATAGGATTAGGCATGTTGGGGAGTGTATATAGAGCGGAGCTTCCTAATGGGAAGATACTTGCTGTGAAGAAACTAGACAAGAGAGTTTCCGATCACCAAGAAGATGACGAGTTTCTTGAATTGGTAAACAATATTGACAGAATTCGGCATGCAAATATTGTTGAGCTTATCGGCTACTGCGTAGAGCATGGACAAAGGCTTCTGATCTATGAATACTGCAGTAATGGGTCGATGTACGAAGCACTTCATTCAGATGATGAATACAAAACAACACTGTCTTGGAATGCTCGCATTCGGATAGCACTTGGAGCAGCCAGAGCCTTAGAGTACTTGCATGAGCAATGTCAGCCACCTGTTATACACAGAAATTTCAAGTCTGCTAACATTCTCCTTGATGAAGATCTATCCGTGCGTGTATCTGACTGTGGTTTGGCTCCATTAATAACTAAAGGCTCTGTACGTCAGCTCTCAGGACAGCTGCTAGCAGCTTATGGCTACGGGGCTCCCGAATTTGAGTCGGGAATATACACCTACCAGAGTGATGTGTACAGCTTTGGAGTGGTTATGTTAGAACTTTTGACTGGTCGTCAGTCCTATGACAGGAAAAGACCTCGTGGTGAGCAGTTTCTTGTAAGATGGGCAATTACTCAACTTCATGATATTGATGCATTATCAAGGATGGTCGATCCTTCTCTAAATGGAGCCTACCCTGCCAAATCTTTGTCAAATTTCGCAGACATTATTTCTAGATGTGTTCAGTCCGAGCCGGAATTTAGGCCAGCAATGTCCGAGGTTGTCTTGTACTTGCTAAATATGATAAGGAGGGAGTCTCAACAAAATGAATCAAATGAAAGATGA 2349 0.4274 MSEMRSTSLYKRMKLKIYIQVLFGLMLIYIVQFSLAATNPSDVAAINRLYAALGNPVLPGWVASAGDPCGEAWQGVQCNDSLIQEITLIGANLGGELGDSLGTFVSIKSISLSNNHIGGIIPTSLPATLQTLFLSGNNLTGSIPPTLSTLTELTALSLNDNQLTGEIPDAFQSLTRLTNLDLSHNNLSGELPPSVESLSAVTTLDLQNNNLSGTLDVLQDLPLTDLNVENNQFSGTIPPKLLSITNFRKDGNQFDLSGNDTIAPARPPHSPVTTSPSGTVVSVTPPSGRVPSGRVPTKPADEPTASKESGSGKSKKNTKRVIWITISGVLGFIILALALVLFLPRCSKRERGRRTSKQHQIGAYGGEITNPWNNGALVQPPSQTEKVPKVAVARPKENPRVVQDEPKMETLPKLLNHEIDMSGLGLDSMPPSPPPPPPPPPPAPPLAAEKVIVEPTTSAGGANINPSKRSSFPPTFAKSFTIASLQQYTNSFSQDNLIGLGMLGSVYRAELPNGKILAVKKLDKRVSDHQEDDEFLELVNNIDRIRHANIVELIGYCVEHGQRLLIYEYCSNGSMYEALHSDDEYKTTLSWNARIRIALGAARALEYLHEQCQPPVIHRNFKSANILLDEDLSVRVSDCGLAPLITKGSVRQLSGQLLAAYGYGAPEFESGIYTYQSDVYSFGVVMLELLTGRQSYDRKRPRGEQFLVRWAITQLHDIDALSRMVDPSLNGAYPAKSLSNFADIISRCVQSEPEFRPAMSEVVLYLLNMIRRESQQNESNER 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03847 782 ProSiteProfiles Leucine-rich repeat profile. 176 198 IPR001611 GO:0005515
Trre12g03847 782 Gene3D Transferase(Phosphotransferase) domain 1 570 782 - -
Trre12g03847 782 ProSiteProfiles Leucine-rich repeat profile. 128 151 IPR001611 GO:0005515
Trre12g03847 782 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 459 569 - -
Trre12g03847 782 MobiDBLite consensus disorder prediction 255 317 - -
Trre12g03847 782 Gene3D Phosphorylase Kinase; domain 1 461 569 - -
Trre12g03847 782 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 32 776 IPR046959 -
Trre12g03847 782 Pfam Protein tyrosine and serine/threonine kinase 495 764 IPR001245 GO:0004672|GO:0006468
Trre12g03847 782 MobiDBLite consensus disorder prediction 272 286 - -
Trre12g03847 782 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 39 266 - -
Trre12g03847 782 SUPERFAMILY L domain-like 38 247 - -
Trre12g03847 782 MobiDBLite consensus disorder prediction 428 447 - -
Trre12g03847 782 MobiDBLite consensus disorder prediction 422 447 - -
Trre12g03847 782 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 570 780 - -
Trre12g03847 782 Gene3D Ribonuclease Inhibitor 39 269 IPR032675 -
Trre12g03847 782 SUPERFAMILY Protein kinase-like (PK-like) 469 766 IPR011009 -
Trre12g03847 782 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Trre12g03847 782 Pfam Leucine rich repeat 128 187 IPR001611 GO:0005515
Trre12g03847 782 ProSiteProfiles Protein kinase domain profile. 492 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03847 Trre-Chr12 54310603 54315524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03847 28 773 Strubbelig Receptor Gene Family AT4G03390 61.346 0.0 859
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trre12g03847 PK_Tyr_Ser-Thr 5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03847 - - mtr:25487613 1249.57