Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03809 ATGGAAATGATAAAAAACACAGAGCGTGTTGTCATCTTCCCTTCTCACCCTCCCTTCCTCCACGACCACTCTCTCCCTCTCTCCCACCTCGACACCGACCGCAACCTCCATGTCACCTTCCGCTACCTCCGCGCTTATGTCAATGCCACCGCGGCCACTACTTCCGACCCCTTCCACGTCATCTCTTCCTCCCTCTCCCAAGCTCTTATTCACTACTACCCACTCGCCGGCACGCTTCGCCACCGCCAAGACCGCCGCCTGGAGCTCCATTGCTCCCCTGGCCAAGGCATCCCTCTCATCCGCGCCACCACCGACTTCACACTCGATTCTGTCAACTACCTCGATGACCCGAAAGCCAGCTTCATCGAGAAGCTTGTGCCCGACCCAGGAACTGAAGAGGGGTTGGAGCACCCGTTCATGCTTCAGCTGACGGTGTTCAAGTGCGGCGGGTACACTCTCGGGGTGGCCACGCACCACGCACTCTGCGACGGGATGGGCGGAGGGCTGTTTTTCAACACAGCAGCTGAATTGGCTCGCGGGGCAACACGGATCACAGTGGAGCCGGTGTGGGACCGGGAGAGGTTGTTAGGTCCCCGGGTTCCTCCCCGAGTGGATTCGCCGTTGATAGAGGAATTTCTGAGTTTGGATAAGAGTGTAATACCTTATGATGAGGACATTGGTGGGGTTGTGAGAGAGTGCTTTGATGTGAGGGATGATTGCTTGGATAAGTTTAAGAAGGACTTGTTTCAACAATCTGGCTTAAACTTCACTACTTTTGAGGCTCTTGGTGCTTACATTTGGAGGTCCAAGGTAAGGGCCTCAGGAGTGAAGGGTGATGAGAAGGTTAAATTTGCATACTCAATCAATATAAGGAGACTTGTAAAGCCATCAGCACCTGCTGGGTATTGGGGTAATGGTTGTGTTCCAATGTATGTGCAGCTGAGTGCCAAAGATTTGATAGAGCAACCCATTTGGGAAACAGCAAAGCTAATCAAAAAGAGTAAAAGCAATGTTACTGATGAATATGTTCACTCCTTCATTGATTACCAGGAGCTTCATTTTGCAGATGGGATCACAGCAGGTAAAAGGATTAGTGGTTTCACAGATTGGAGACACTTAGGCCATGCAACTGTGGACTTTGGTTGGGGAGGTCCAGTTACTGTCTTGGCACTTGGAAAGAACTTGCTTGGGAGTGTTGACCCTTGCTACTTTTTGCCTTATTCAACAGCCAGTGCAGGGAAGAAGGAGGGTTTCAAGGTTTTGATCACTTTGGCAGAGGCTTCTGTTCTTGCTGTTAGCAAAGACATGCAAGTGTTTGCCAGTATCCAAGAACAAGTTGTTTGA 1344 0.5074 MEMIKNTERVVIFPSHPPFLHDHSLPLSHLDTDRNLHVTFRYLRAYVNATAATTSDPFHVISSSLSQALIHYYPLAGTLRHRQDRRLELHCSPGQGIPLIRATTDFTLDSVNYLDDPKASFIEKLVPDPGTEEGLEHPFMLQLTVFKCGGYTLGVATHHALCDGMGGGLFFNTAAELARGATRITVEPVWDRERLLGPRVPPRVDSPLIEEFLSLDKSVIPYDEDIGGVVRECFDVRDDCLDKFKKDLFQQSGLNFTTFEALGAYIWRSKVRASGVKGDEKVKFAYSINIRRLVKPSAPAGYWGNGCVPMYVQLSAKDLIEQPIWETAKLIKKSKSNVTDEYVHSFIDYQELHFADGITAGKRISGFTDWRHLGHATVDFGWGGPVTVLALGKNLLGSVDPCYFLPYSTASAGKKEGFKVLITLAEASVLAVSKDMQVFASIQEQVV 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03809 447 Gene3D - 226 436 IPR023213 -
Trre12g03809 447 Gene3D - 2 210 IPR023213 -
Trre12g03809 447 Pfam Transferase family 4 436 - -
Trre12g03809 447 PANTHER ACYL TRANSFERASE 4 4 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03809 Trre-Chr12 54078697 54080420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03809 46 386 Monolignol Biosynthesis Gene Families AT5G48930 30.618 5.98e-40 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03809 - - gmx:100817021 681.404