Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03808 ATGAACAACACAAACATGAAGGTGATAGAACAGAGTCAAATTTCACCACCACCAAATTCAGTTCCATCACCAACCATCCTCCCCTTAACTTTCTTTGACATTCCATGGGTTTACTGTCACCCAATTCAACGCATATTCTTCTACCACTTTCCTCATCCAACAAATCACTTTCTTCAAACAACACTTCCCATTCTCAAACACTCTCTTTCCATTACCCTCCAACACTTCTTCCCATTTTCCTCCAACCTCATCATCCCTTCAGATTCCCAAACTGAACCTTACATACGTTATCTCAACACCGACTCTCTCTCATTCATTGTAGCTGAATCCTCAGCAGACTTCAATCTCCTCATATCTGATTCACAAGATGTTCAAAATTGGCACCCTCTTGTTCCAAATTTGCCTCCACCCAGTACTGAACAGAACAATACACGAGTCATTCCAATAATGTCCATACAAGTTACCGTTATGCCAAACTCCGGATTCTCTATATGTCTCACTTTCAACCATGTTGCTGCAGACGGGAAATCACTTCACCATTTTATGAAATTTTGGGCCTCTGTTTCAAAAAACAGAGCAAACAACAATGATTTGTCTCTTGATCAGTCTCTGTCCATGCCTCTCGATCTGCCTTCACACGAAAGAGATAGAGTTAAAGATCCAAAGGGTCTTAAACACATCAACTTACAAGAACTACAAGGTTTTGATTCCAAAAACTTGGAATCCGCGGATCTAGTTCAAGATTCTTATGTTAATAAGATAAGAAAAACTTTAGTATTGAGCTTTGAACAAGTTCAGAAATTGAAGAAATGGGTTGCTGAAAAATGTAAAGATAGTCATGGAACACAACATCTGTCAACTTTTGTTGTAACAAGTTCCTTGATTTGGTTCTGTATGATAAAATCAGAGCAAATTGAATGTGATCATGTTGATGATCTCTGCAACTTTGTGTTTCTTGCAGAATGTCGTGATACCGCTGAAGTTTCATTACCAAAAACTTACTTTGGAAATTGTGTAACACCTTGTATTGTGGCTGTAAAGAGAGATGAGTTAGTTGGAAAAAATGGGATTGTTGTGGCTGCACAGGGTATTGAAAAGAAGATAAGAGATTTTAAGAGTAATACTTTGTTAGGAGCCGAATCTTTGATGTCTGATTTTAGTGATTTATTGAAGCCGGGTAAATCTCTTGTAGTAGTTGCTGGATCACCTAAACTTGCTGTTTATGAGACTGATTTTGGTTGGGGGAAGCCTAAGAAATCTGATGCAGTTCATCTTGATTCCTCCGGTTCGATATCTCTTTCTGATTGTAGAGATGGTGGAAATGGAATTGAGATTGGTTTGGCTCTTGAGAGGTCTAGAATGACTAATTTCATGATCATCTTTCAAGAACAACTTGATAATATTTGTAGCATATAA 1416 0.3799 MNNTNMKVIEQSQISPPPNSVPSPTILPLTFFDIPWVYCHPIQRIFFYHFPHPTNHFLQTTLPILKHSLSITLQHFFPFSSNLIIPSDSQTEPYIRYLNTDSLSFIVAESSADFNLLISDSQDVQNWHPLVPNLPPPSTEQNNTRVIPIMSIQVTVMPNSGFSICLTFNHVAADGKSLHHFMKFWASVSKNRANNNDLSLDQSLSMPLDLPSHERDRVKDPKGLKHINLQELQGFDSKNLESADLVQDSYVNKIRKTLVLSFEQVQKLKKWVAEKCKDSHGTQHLSTFVVTSSLIWFCMIKSEQIECDHVDDLCNFVFLAECRDTAEVSLPKTYFGNCVTPCIVAVKRDELVGKNGIVVAAQGIEKKIRDFKSNTLLGAESLMSDFSDLLKPGKSLVVVAGSPKLAVYETDFGWGKPKKSDAVHLDSSGSISLSDCRDGGNGIEIGLALERSRMTNFMIIFQEQLDNICSI 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03808 471 Gene3D - 251 468 IPR023213 -
Trre12g03808 471 Gene3D - 5 245 IPR023213 -
Trre12g03808 471 PANTHER - 6 466 - -
Trre12g03808 471 MobiDBLite consensus disorder prediction 1 20 - -
Trre12g03808 471 Pfam Transferase family 19 457 - -
Trre12g03808 471 MobiDBLite consensus disorder prediction 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03808 Trre-Chr12 54075281 54076696 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03808 45 454 Monolignol Biosynthesis Gene Families AT5G48930 22.066 2.44e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03808 - - tpra:123894645 848.966