Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03796 ATGAAGGTGATAGAGCAGAGTCAAGTTGCACCATTACCTGGTTCACTTCCATCACCAACCATACTCCCCCTCACTGTCTTCGACAATACATGGTTTTACTGCCAATACCCCGCTAAACGCATATTCTTCTACCACTTTCCTCATCCAACTCATCACTTTCTTAAAACAACAATTCCCATTCTCAAACACTCTCTTTCCTTAACCCTCCAACACTTCTTCCCCTTCTCCTCCAACCTCATCATACCTTCAGATTCCCAAACTGAACCTTACATACGTTACCTCGATACCGACTCTCTCTCCTTCACCGTAGCTGAATCCTCAGCAGACTTCAACATACTCATATCTGATTCACAAGATGCTAAAAACTGCCACTCTCTTGTTCCAAATTTGCCTCCACCTAGTACTGAACAGAACAATACACGAATCATTCCAATAATGGCCATTCAAGTCACTATTATGCCCAACTCCGGCTTATCTATCTGTCTCGCATTCAAACATGTGGCTGCAGACGGAAAATCACTTCACCATTTTATGAAATTTTGGGCCTTTGTTTCAAAAAACAGAGAAACCAACAAAAACAATTTGTCTCCTGAACACTCTCTGACTCTTGATCTTCCTTCCCATGAAAGACATACAATACTTAATACCCCAAAAGATCCTAAAATAATCTACTTACAAGAAAAACAAGATTATCTATTAGAAAAAGTGGAATTCACAAATCTCGTTCCAGATGTGTATCCTAAAAATGTACGAACTTGTTTAGTGTTGAGTCATGAACAAGTTCAGAAACTGAAGAAGTGGATCATTGATAAATGTATAGAAACAACACAACATTTGTCAACTTTTGTGGTAACATGTTCCTTGATTTGGTGTTGTATGGTAAAATCAGAGCAAAGTGATCAAGGTGATGCTGTTGATGATCTATGCAACTTCCTGTTTTTTGCAGATTGTCGTAGTCGTCGTGAATTTTCATTATCAAAAACTTATTTTGGAAATTGTCTAGCATCTTATATTGTGGCTGTAAAGAGAGATGAGTTAGTTGGGAAAAATGGTTTTGTTGTGGCGGCAAATTGTATTGATAGGAAGATAAAAGATTTCAAGAGTGATGCTTCGTTAGGATCTGAAACGATGATGCTTGATTATAAGGAATTATTCAAACCAGGTAAGTCTACTGTAATGGTTTCTGGATCACCTAAACTTGATGTTTATGAGACTGATTTTGGGTGGGGGAAGCCTAAGAAATCTGATGTAGTTCATCATGATTCGTCCAATGTGATTTCTCTGTCTGATTGTAGAGATGGTGGATGCGGAATTGAGATTGGTTTGGCTCTCGAGAGGTCTCGAATGACTAATTTCATGAACATCTTTCAAGAACAACTTGATAACATTTGTAGCATGTGA 1401 0.3826 MKVIEQSQVAPLPGSLPSPTILPLTVFDNTWFYCQYPAKRIFFYHFPHPTHHFLKTTIPILKHSLSLTLQHFFPFSSNLIIPSDSQTEPYIRYLDTDSLSFTVAESSADFNILISDSQDAKNCHSLVPNLPPPSTEQNNTRIIPIMAIQVTIMPNSGLSICLAFKHVAADGKSLHHFMKFWAFVSKNRETNKNNLSPEHSLTLDLPSHERHTILNTPKDPKIIYLQEKQDYLLEKVEFTNLVPDVYPKNVRTCLVLSHEQVQKLKKWIIDKCIETTQHLSTFVVTCSLIWCCMVKSEQSDQGDAVDDLCNFLFFADCRSRREFSLSKTYFGNCLASYIVAVKRDELVGKNGFVVAANCIDRKIKDFKSDASLGSETMMLDYKELFKPGKSTVMVSGSPKLDVYETDFGWGKPKKSDVVHHDSSNVISLSDCRDGGCGIEIGLALERSRMTNFMNIFQEQLDNICSM 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03796 466 Gene3D - 1 237 IPR023213 -
Trre12g03796 466 PANTHER - 1 461 - -
Trre12g03796 466 Gene3D - 247 463 IPR023213 -
Trre12g03796 466 Pfam Transferase family 21 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03796 Trre-Chr12 53958606 53960006 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03796 41 449 Monolignol Biosynthesis Gene Families AT5G48930 22.118 6.40e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03796 - - tpra:123894645 685.641