Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03794 ATGGGAAGATCACCTTGTTGTGATAATAAAAATGGACTCAAAAAAGGTCCATGGACAAATGAAGAAGATCAGAAGCTTATCAACTACATTAATACTCATGGACCTGGAAATTGGCGCAACCTTCCTAAAAATGCTGGTCTTCAAAGGTGTGGCAAGAGTTGTCGGCTTCGATGGACGAATTACCTTAGACCTGATATCAAGAGAGGAAGATTTTCCTTTGAAGAAGAGGAGACTATCATTCAGCTCCATAGTGTCTTGGGAAACAAGTGGTCGGCTATAGCTGCTAGATTACCAGGAAGAACAGACAATGAAATAAAGAATTACTGGAACACCCGCATAAGGAAGAGACTACTTCGGAATGGAATTGACCCCGTTACTCATACTCCGCGTCTCGATCATCTATTCGACATGTCCTCCATTGATATTCTCAGATCAGCTTTATTAGGAGGAACCAATTCATCATTTCTGAACCTATTAGGTGGAGCTCAAGCTTTGATGAATCCTGAATTGTTAAAGCTAGCTGCAACTGCAACACTATTAAACAACAACATGAATTTGGTTTCACAAAATCCACAACAAATCAATAATGTTGCTAATTGTACTCATCAACAAGTACAAAGTCAAGTTTACCCTCAAGATCAATTTCAAACACCAACTCATATCAACAATGTGAATAATGGTTTATTAGGAAACATGAGTTGTTCAAGTTCAGCTGAAAATTCAAATCCTAGTTATTTTGGAGAGGATTTGATTTCTAAACAATATTCAGAATTGTTTCATTGTCTTAATGATGTAAACAAAAATAATACGGGGTATGAATCGGTTATATCGTCTACGCCTTTATCGACAACGCCAACACCGTTGAATTCACCATCAACATATGTGAATAGCAACACAGAGGAAGAAAGAGACACATATTGCAGTGACATATTCAAATTTGAGATTCCAGAGGGTACTTTGGACATTAATGATTTCATGTAA 981 0.3731 MGRSPCCDNKNGLKKGPWTNEEDQKLINYINTHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTRIRKRLLRNGIDPVTHTPRLDHLFDMSSIDILRSALLGGTNSSFLNLLGGAQALMNPELLKLAATATLLNNNMNLVSQNPQQINNVANCTHQQVQSQVYPQDQFQTPTHINNVNNGLLGNMSCSSSAENSNPSYFGEDLISKQYSELFHCLNDVNKNNTGYESVISSTPLSTTPTPLNSPSTYVNSNTEEERDTYCSDIFKFEIPEGTLDINDFM 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03794 326 CDD SANT 70 111 IPR001005 -
Trre12g03794 326 MobiDBLite consensus disorder prediction 278 299 - -
Trre12g03794 326 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Trre12g03794 326 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Trre12g03794 326 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Trre12g03794 326 FunFam MYB-related transcription factor 14 67 - -
Trre12g03794 326 Gene3D - 14 67 - -
Trre12g03794 326 SMART sant 14 64 IPR001005 -
Trre12g03794 326 SMART sant 67 115 IPR001005 -
Trre12g03794 326 FunFam MYB transcription factor 70 117 - -
Trre12g03794 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Trre12g03794 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Trre12g03794 326 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre12g03794 326 Gene3D - 70 117 - -
Trre12g03794 326 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 256 - -
Trre12g03794 326 CDD SANT 17 62 IPR001005 -
Trre12g03794 326 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03794 Trre-Chr12 53929300 53930867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03794 1 326 MYB Transcription Factor Family AT4G21440 48.901 5.59e-97 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre12g03794 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03794 K09422 - gmx:102668351 402.905