Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03787 ATGGAGTTTAACCTTGAAAACCCTCTTGAAAACTTTCATGACCTTCCTAATTCTCAATGTGTTTCTTATCTTTTCCTCATTGAATCTGACCACATCCCACCACTAAATTACTTTCATAGTCTCAAATCAAATGAGTTTGATGTTTCAGTTAGAAGTGATTTCATCTCTTTAATCTCACAGTTGTCCTACAACTTTGATCCATTTGTGACTTATCTAGCTATCAACTATTTGGATCGCTTCCTTGCTAACCAAGGGATATTGCAGCCAAAGCCATGGGCAAATAAACTTATTGCAGTAACTTGCTTCTCTCTAGCAATAAAGATGTTGAAAACAGAGTACTCTGCCACTGATGTTCAGGGTTTTCTGAATCATAGTGATGGTGGTTTCATATTTGAGACACAAACAATAAAAAGAATGGAAGCACTTGTCTTAGGAGCATTACATTGGAGAATGCGTTCAATCACTCCTTTCTCTTTCATTCCTTACTTCACCAATTTGTTTAGGCTTGATGATATAACATTAAAAGTTCTTAAAGATCGAGCTTCTGAAATTATGTTAAAGTCACAAAAAGATATTAAGGTTTTGGAATTCAAGCCATCTATAGTTGCTGCTTCATCTCTTCTTTATGCTTCACATGAATTGTTTCCATTTCAATATCCAGGCTTCATGGGAACAATATCCGATTGTTCATATGTAAATAAAGAAAGTGTTGTGCAGTGCTATAATGTTATACAAGATATAGCTAAAGAGGAGTACGAATCCATGTTTAATGTGAATTCAAGTTCAGGCACACCAGTTAATGTGTTAGACGAAAATTTTCTAAGCTTGGAAAGTGAAAAAACAAATGGAACCAATGTTACTCCTACTAAGAGAAGGAAAATTTAA 885 0.3458 MEFNLENPLENFHDLPNSQCVSYLFLIESDHIPPLNYFHSLKSNEFDVSVRSDFISLISQLSYNFDPFVTYLAINYLDRFLANQGILQPKPWANKLIAVTCFSLAIKMLKTEYSATDVQGFLNHSDGGFIFETQTIKRMEALVLGALHWRMRSITPFSFIPYFTNLFRLDDITLKVLKDRASEIMLKSQKDIKVLEFKPSIVAASSLLYASHELFPFQYPGFMGTISDCSYVNKESVVQCYNVIQDIAKEEYESMFNVNSSSGTPVNVLDENFLSLESEKTNGTNVTPTKRRKI 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03787 294 SMART Cyclin_C_2 154 268 IPR004367 -
Trre12g03787 294 FunFam D6-type cyclin 150 242 - -
Trre12g03787 294 Pfam Cyclin, C-terminal domain 154 251 IPR004367 -
Trre12g03787 294 FunFam D6-type cyclin 34 149 - -
Trre12g03787 294 SUPERFAMILY Cyclin-like 136 249 IPR036915 -
Trre12g03787 294 SUPERFAMILY Cyclin-like 18 151 IPR036915 -
Trre12g03787 294 Gene3D - 34 152 - -
Trre12g03787 294 Pfam Cyclin, N-terminal domain 22 151 IPR006671 -
Trre12g03787 294 CDD CYCLIN_AtCycD-like_rpt2 154 244 - -
Trre12g03787 294 PANTHER CYCLINS 23 253 IPR039361 -
Trre12g03787 294 SMART cyclin_7 158 246 IPR013763 -
Trre12g03787 294 SMART cyclin_7 53 145 IPR013763 -
Trre12g03787 294 Gene3D - 24 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03787 Trre-Chr12 53833518 53835764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03787 1 293 Core Cell Cycle Gene Families AT4G03270 46.104 9.02e-77 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03787 K18812 - gmx:100799951 453.366