Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03786 ATGATGAGAACTTATTATTTTTGTGACAAAAATGGATTGAGAAAAGGCACTTGGACAACTGAGGAAGACAAAAAGTTGATTGCTTATGTTACTAGATATGGCTGTTGGAATTGGCGCCAACTACCTAAATTTGCAGGTCTTCAAAGGTGTGGGAAGAGTTGTAGATTAAGGTGGTTGAACTATCTAAGGCCAGGTATCAAAAGAGGGAACTTTAGTCAACAAGAAGAAGAGACTATCATTAAACTTCACCAAGAATTGGGTAATAGATGGATCATGATTGCTGCAAATTTACCGGGAAGAACAGATAATGAGATAAAGAATCATTGGCACGCTACCTTAAAAAAGCGCATTATAAAAAATAACATGTCAGACACTAAATGTGAAACACGAAATGCCAAAGATTCAAAGTCCAATAATCACCCTACAATGGAAGAAGCCAATAAACTTGATGGTGTATTAGAGAACAGTGATGCCAATATTTCAAATCCACTTTGTTCACGACCCTCTTCAAGTGAATTTTCTTGCACAACAATGGATACTGCAGCTACCACAATATCATATGAAAATTCTCATTTTGATGACAATGAGATTCCTTTTATGGATGCATACATGGAGGCTGTGAGTGAAAATTTCTGGACAGAACCATATATGATAGAAAGTTCCTATGTCCCTCCAATTGAAGAAGCTATATTACTTCTCGAAGGGTGTGAACATGAATACCTTAGTCCTATGTACGATATAGAACTTTGGAGCTGTGTAGAATAA 765 0.3647 MMRTYYFCDKNGLRKGTWTTEEDKKLIAYVTRYGCWNWRQLPKFAGLQRCGKSCRLRWLNYLRPGIKRGNFSQQEEETIIKLHQELGNRWIMIAANLPGRTDNEIKNHWHATLKKRIIKNNMSDTKCETRNAKDSKSNNHPTMEEANKLDGVLENSDANISNPLCSRPSSSEFSCTTMDTAATTISYENSHFDDNEIPFMDAYMEAVSENFWTEPYMIESSYVPPIEEAILLLEGCEHEYLSPMYDIELWSCVE 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03786 254 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre12g03786 254 Gene3D - 69 145 - -
Trre12g03786 254 Gene3D - 15 67 - -
Trre12g03786 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Trre12g03786 254 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Trre12g03786 254 FunFam MYB-related transcription factor 14 67 - -
Trre12g03786 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre12g03786 254 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 185 - -
Trre12g03786 254 SMART sant 14 64 IPR001005 -
Trre12g03786 254 SMART sant 67 115 IPR001005 -
Trre12g03786 254 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Trre12g03786 254 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Trre12g03786 254 CDD SANT 70 113 IPR001005 -
Trre12g03786 254 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Trre12g03786 254 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03786 Trre-Chr12 53824916 53826783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03786 8 221 MYB Transcription Factor Family AT2G31180 44.860 3.41e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre12g03786 Myb_DNA-binding 4.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03786 K09422 - mtr:11411430 326.25