Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03784 ATGTTCAATACAAGGAATCCATGTTTCTTGCTTAATCTTCTCAACCTCATCTTCTCTTTACAGTCGTATCTTTCCCATGCAGCTATAACTACAATCTCTGCAAATCAATCTCTCTCTGGTGATCAAACTCTAGTCTCTGAAGGGGGAATCTTTGAATTGGGTTTCTTTAAACCAGGTAAATATTCTAACTACTACATAGGCATATGGTACAAAAAGATCAGTGTACAAACAATTGTGTGGGTAGCCAATAGAGACAACCCTGTCTCTGATAAATACACTGCTACCTTAAAAATATCAGCTGGTAATTTAGTTCTATTCAATAAGTCTTCAAACCAAGTTTGGTCAACAAACATGAGTTCTTCTAATACAGGTTCTGTTGTAGCTATCCTCCTAAATAGTGGAAATCTAGTTTTAAGAAATAGGCCTGATGATGATGATGCAATAGATCCTCTGTGGCAGAGTTTTGATCACCAAACAGATACGTTTCTTCCGGATGGAAAAATTAAGCTGGACAAGAAAACAAAGCAGCCTCAATATCTTACTTCATGGAAGAATAATGAAGATCCTTCAACGGGTCTTTTCTCTTTGGAACTAGACCCAAATGGAACAAATTCTTATCTTATTGTTTGGAATAAGTCTGAACAGTATTGGACAAGTGGATCTTGGAATGGACAAATTTTTAGTCTGGTTCCTGAGATGAGGTCAAATTATATCTACAATTTTTCATTTGTGTCGAACGGGAATGAGAGCTATTTCACTTACTCAGTGTATGACCATTCCTTTCTATCTCGGCTTGTGATGGATGTCTCAGGACAGATTAAGCAATATACATGGTTGGAAAGTACCCAACAATGGAACCTCTTTTGGTCACAACCACGGGGACAATGTGCGGTTCATTCTTTCTGTGGTCCATCTGGGAGCTGTACTGAGTATTCGAAGCCGTATTGTAATTGTTTGAGTGGTTTTGAGCCAAAGTCGCTATCTGATTGGGATCTGGGGGATCACTCAGGTGGGTGTATCAGGAAAAAAACATTGCAATGTGAGGGTTCTGATCACTCTAATAGGGATAATGATGGGTTCCTTGCAATCCCCAACATGGCATTACCTATATATGCACAGTCTGTGGGGTTAGCAAATGCAGCTGAATGTGAATTAACTTGCTTGAAAAATTGCTCTTGCACTGCTTATGCATATGATAGTAATGGATGTTCAATTTGGATCGGAGACCTCATTAATCTGCAACTATTGTCTTCTGATGATAGTAGTGGAAAAATTTTGTATGTCAAACTTGCAACATCAGAACTCCGTGATGCTAGTAAAAACAGTTCTCGGGCGAGGGTGATTATTGGTGGTGTTGTGGGAGCTATTATTAGCATAGGAATACTCTTGGCCCTTCTATTGTTTGTTATGCTTAGGCGAAGAAAGAGAATGCTTGCAACTGGAAATCTCTTGGAGGGTTTTATGGTGGAATTTGGGTATAAGGATTTGCAAAACGTGACTAAGAATTTCTCCGAGAAATTAGGAGGAGGAGGTTTTGGTTCTGTTTTCAAAGGAACGTTGGCTGATTCAAGTGTGGTTGCAGTGAAGAAGCTGGAGGTTGTTAGCCAGGGAGAGAAGCAGTTCAGAACAAAAGTGAGTATAATAGGGACAATGCAACATGTTAATCTTGTTCGCCTCCGTGGATTCTGCTCAGAAGGTACCAAAAGGTTGCTGGTTTATGATTACATGAAAAATCATTCCTTGGATTTGCATTTGTTCTTGAAGAAGGATTCTTCTGAGGTGTTGGACTGGAAAATGAGATACCAAATTGCTCTTGGAATTGCAAGGGGACTAATTTATCTCCATGAGAAATGTGAAGATTGTATCATACACAATGATATAAAGCCAGAAAACATTCTACTTGATGCTGATTTTTGTCCAAAAATTGCGGACTTAGGTCTACCTAAGCTAATTGGACGGGATTTCAACAAGATTCTTACAACAACGAAGGGAACAAGAGGCTATCTTGCCCCGGAGTGGTTATCTAGGGCTGCTATCACAGCCAAATCTGATGTTTACAGCTATGGAATGATGCTTTTTGAGGTTGTATCAGGTAGGAGAAACTCTGATCCATCTGCCGATCGCCAAGTTACTTTCTTTCCTACCTTGGCTGCAAAAGTAGTTAACAAAGGTGGTAATGTCCTTAGCCTTTTAGACCCTAGGTTGGAGGGAAATGCTGACATTGTGGAGGTCACTGAAATGATAAAAGTTGCTTCTTGGTGTGTCCAAGAAAATGAAACTCAGAGGCCAACCATGCGTCAGGTAGTTCAAATTCTTGAGGGGATCTTGGATGTGAATTTGCCACCAATTCCAAGATTCAATCAAGTGTTTGTAGATAACTAA 2382 0.3971 MFNTRNPCFLLNLLNLIFSLQSYLSHAAITTISANQSLSGDQTLVSEGGIFELGFFKPGKYSNYYIGIWYKKISVQTIVWVANRDNPVSDKYTATLKISAGNLVLFNKSSNQVWSTNMSSSNTGSVVAILLNSGNLVLRNRPDDDDAIDPLWQSFDHQTDTFLPDGKIKLDKKTKQPQYLTSWKNNEDPSTGLFSLELDPNGTNSYLIVWNKSEQYWTSGSWNGQIFSLVPEMRSNYIYNFSFVSNGNESYFTYSVYDHSFLSRLVMDVSGQIKQYTWLESTQQWNLFWSQPRGQCAVHSFCGPSGSCTEYSKPYCNCLSGFEPKSLSDWDLGDHSGGCIRKKTLQCEGSDHSNRDNDGFLAIPNMALPIYAQSVGLANAAECELTCLKNCSCTAYAYDSNGCSIWIGDLINLQLLSSDDSSGKILYVKLATSELRDASKNSSRARVIIGGVVGAIISIGILLALLLFVMLRRRKRMLATGNLLEGFMVEFGYKDLQNVTKNFSEKLGGGGFGSVFKGTLADSSVVAVKKLEVVSQGEKQFRTKVSIIGTMQHVNLVRLRGFCSEGTKRLLVYDYMKNHSLDLHLFLKKDSSEVLDWKMRYQIALGIARGLIYLHEKCEDCIIHNDIKPENILLDADFCPKIADLGLPKLIGRDFNKILTTTKGTRGYLAPEWLSRAAITAKSDVYSYGMMLFEVVSGRRNSDPSADRQVTFFPTLAAKVVNKGGNVLSLLDPRLEGNADIVEVTEMIKVASWCVQENETQRPTMRQVVQILEGILDVNLPPIPRFNQVFVDN 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03784 793 CDD PAN_AP_plant 344 431 - -
Trre12g03784 793 ProSiteProfiles PAN/Apple domain profile. 347 431 IPR003609 -
Trre12g03784 793 SMART serkin_6 501 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03784 793 ProSiteProfiles Protein kinase domain profile. 501 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03784 793 SMART ntp_6 355 430 IPR003609 -
Trre12g03784 793 PANTHER OS07G0415500 PROTEIN 16 784 - -
Trre12g03784 793 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544
Trre12g03784 793 FunFam Serine/threonine-protein kinase 24 155 - -
Trre12g03784 793 SMART blect_4 35 158 IPR001480 -
Trre12g03784 793 FunFam serine/threonine-protein kinase PBS1-like 471 575 - -
Trre12g03784 793 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Trre12g03784 793 Pfam Protein kinase domain 504 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03784 793 CDD B_lectin 35 157 IPR001480 -
Trre12g03784 793 CDD STKc_IRAK 507 775 - -
Trre12g03784 793 Pfam D-mannose binding lectin 77 184 IPR001480 -
Trre12g03784 793 SUPERFAMILY alpha-D-mannose-specific plant lectins 63 223 IPR036426 -
Trre12g03784 793 Gene3D - 23 156 IPR036426 -
Trre12g03784 793 Pfam PAN-like domain 355 413 IPR003609 -
Trre12g03784 793 Gene3D Transferase(Phosphotransferase) domain 1 576 780 - -
Trre12g03784 793 ProSiteProfiles Bulb-type lectin domain profile. 29 151 IPR001480 -
Trre12g03784 793 SUPERFAMILY Protein kinase-like (PK-like) 487 773 IPR011009 -
Trre12g03784 793 PIRSF SRK 3 793 IPR024171 GO:0004674
Trre12g03784 793 ProSitePatterns Protein kinases ATP-binding region signature. 507 530 IPR017441 GO:0005524
Trre12g03784 793 Gene3D Phosphorylase Kinase; domain 1 468 575 - -
Trre12g03784 793 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 576 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03784 Trre-Chr12 53812808 53815189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03784 457 782 Receptor kinase-like Gene Family AT5G20050 39.444 6.27e-76 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre12g03784 Pkinase 7.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03784 - - psat:127086809 1182.93