Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03775 ATGAAAAAGAATTGTGAACTTTGCAAACTTCCGGCTAGAACTTTCTGTGAGTCAGACCAGGCTAGCTTATGCTGGGACTGCGATTCTAAGGTCCACGGTGCTAATTTTTTGGTTGAGAGACACACCAGAACTCTCCTCTGTCACGCGTGTCAGTCTCCGACGCCGTGGAAAGCTTCCGGCGCTAGGCTCGGTAACGCGCTTTCGTTGTGTGAAAGATGCGCCGGTGGAAGAAAAATTGATTCCGTACAACAAAATGAAGAGAGTGAAGGTGACAATGAGGATGAGGTTGAAACTGATTCCGATGAGGATTCTGATGAGGAGGATGAGGATGATGATGATGTTGATGGTGATAATCAGGTTGTTCCTTGGTCTGCAACGGCTATGCCACCGGCGGCGTCGAGTTCTTCCAGTAGCGAAGAATCGGTTAGCAAGTGTAACGAGAACGATGAAGTTGTTTCGAAGTTAGTTACAGAAATTACCTTGAAACGACGTCGTGTGGATCATGATTTTCAGGTTTCGGATTCAAAAAACTGGAAAAATCAACGGAGAGAGGAGGTTGATTTGTTAGGGTGTGACGGAGAACCGTCGTCAAAGGCGGCGATACGGCGTTATTGTGACGGAGATGGAACGGAGCATCCTCAGCCGCACGATTGA 654 0.4771 MKKNCELCKLPARTFCESDQASLCWDCDSKVHGANFLVERHTRTLLCHACQSPTPWKASGARLGNALSLCERCAGGRKIDSVQQNEESEGDNEDEVETDSDEDSDEEDEDDDDVDGDNQVVPWSATAMPPAASSSSSSEESVSKCNENDEVVSKLVTEITLKRRRVDHDFQVSDSKNWKNQRREEVDLLGCDGEPSSKAAIRRYCDGDGTEHPQPHD 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03775 217 MobiDBLite consensus disorder prediction 128 142 - -
Trre12g03775 217 MobiDBLite consensus disorder prediction 81 148 - -
Trre12g03775 217 SMART bboxneu5 1 46 IPR000315 GO:0008270
Trre12g03775 217 MobiDBLite consensus disorder prediction 86 117 - -
Trre12g03775 217 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Trre12g03775 217 CDD Bbox1_BBX-like 5 46 - -
Trre12g03775 217 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03775 Trre-Chr12 53725372 53726170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03775 1 130 C2C2-CO-like Transcription Factor Family AT4G27310 46.108 6.42e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre12g03775 zf-B_box 9.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03775 - - mtr:11417549 300.056