Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03765 ATGTTCTGCGAGAATAATTCTTTGATTTGGTCACATGTCTTTTACCAAGGAGAAATTCTAAGCTCTCTAAGGAGCGCTTCCATTTTCTCACCAGTAACCCAATTACTCTCCACCTCTACTAAGTGTAGTGCTACCTGCATTGAATTGCGTATGTTGGCGAAAGCTTGTGAAAAAGGGGATGGATCTAAGTCCCTGGGTAAGATACTGGCAAAATGGAAAGAATATAATGCCCAACTTGAAGCCTGCAGTGATGCAGACAAGCCTGTCCGAAAAGTTGCAGCTAAGGGGTCGAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCTGAAAACTCGCGGTGTAATTATAGAGGTGTTAGGCAGAGGACTTGGGGGAAATGGGTTGCTGAAATCCGCGAGCCTAACCGAGGGAGTAGGCTATGGCTAGGTACTTTTCCAACTGCTATTGGTGCTGCTCTTGCTTATGATGAAGCAGCCAGGGCAATGTACGGTTCTTGTGCTCGTCTCAATTTTTCAAATGTTTCGGTTCCCAGATTCTCTGAGGAATCTTCTAATGATTCTCCAGATGCAAATCATTCTGGTTCCTCAATGACTGTATTGACAAATACCGAGTCCATGATAATACCAAATAACTCGGGGATAGGAGTTGATGAAGAGACTGAAATGGAACCTGTTTCCTTATCCTTAACTGTAAAACAGGAGAATGAGGAAGGTGAATCAGGATAA 723 0.4371 MFCENNSLIWSHVFYQGEILSSLRSASIFSPVTQLLSTSTKCSATCIELRMLAKACEKGDGSKSLGKILAKWKEYNAQLEACSDADKPVRKVAAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFSNVSVPRFSEESSNDSPDANHSGSSMTVLTNTESMIIPNNSGIGVDEETEMEPVSLSLTVKQENEEGESG 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03765 240 SUPERFAMILY DNA-binding domain 114 171 IPR016177 GO:0003677
Trre12g03765 240 Gene3D AP2/ERF domain 114 172 IPR036955 GO:0003700|GO:0006355
Trre12g03765 240 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Trre12g03765 240 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Trre12g03765 240 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Trre12g03765 240 CDD AP2 113 173 IPR001471 GO:0003700|GO:0006355
Trre12g03765 240 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 56 217 - -
Trre12g03765 240 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Trre12g03765 240 MobiDBLite consensus disorder prediction 177 196 - -
Trre12g03765 240 MobiDBLite consensus disorder prediction 203 240 - -
Trre12g03765 240 Pfam AP2 domain 113 163 IPR001471 GO:0003700|GO:0006355
Trre12g03765 240 FunFam Ethylene-responsive transcription factor 2 113 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03765 Trre-Chr12 53640039 53647767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03765 43 194 AP2-EREBP Transcription Factor Family AT2G40340 52.564 1.79e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre12g03765 AP2 2.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03765 - K09286 tpra:123899058 352.829