Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03756 ATGCACGTCCACATGAAAGCTGAGTTAAAAGCAACATCAATTTCCTTTCAAAACCAAACACTCTTCAACACACACCAAAACACTCCTCTTCCTGAGCCAGAAGCACTTAAAGGTTGTCTAGGAAGTTTAGATGGAGCATGTATTGAAAAGCTCTTACTTCATTGTGCAAGTGCTTTGGAAAACAATGATATAACTTTAGCTCAACAAGTTATGTGGGTCTTAAACAACGTTGCTTCGCCATTAGGCGACACAAACCAAAGACTCACTTCATGGTTTCTTAGAGCATTAATCTCTAGAGCTTCAAGAATTTGTCCTGTTTCAATGAATTTCAAAGGAAGTAACATAATTCAAAGAAGATTGATGTCGGTTACCGAACTCGCCGGGTATGTTGATTTAATTCCTTGGCATAGGTTTGGATTTTGTGCTTCAAACAATGAAATTTTCAAAGCAATTAAAGGATTCAAAAGGGTACATATTTTAGATTTTAGCATAACACCTTGTATGCAATGGCCTACTTTTATAGATTCTTTGGCTAAATTACAAGAAGGTCCTCCTTCACTTAGAATCACAGTTCCATTTTTTAGGCCAATGGTTCCACCTTTGGTCAATATCTCAATACATGAAGTTGGTCAACGTTTAGGTAATTTTGCAAAGTTTAAGGATGTCCCTTTTGAATTTAATGTTATTGGAGATAATGTTTCATTGACTTCTGAAGAATTGAGCAATATTGAATCAACAAGTTTTCATTTTGAATCAATGTTAAGTCTCTTGAATCCTAACATGTTAAATCTTAGGGAAGATGAAGCTTTGGTTGTAAATTGTCAAAATTGGCTACGATATTTGTCCAATGATAGAAAAGGTCAAAATATTTCGGTTCGCGACGCTTTTATAAATTTAGTTAAAGGACTTAACCCTCAAATTGTGCTATTGGTTGATGAGGATTGTGATCTTAGTTCATCAAGTTTAACATCAAGAATTACAGCTTCTTTTAACCATTTATGGATACCCTTTGATGCATTGGACACATTTTTACCTAAAGATAGTTGTCAAAGGATAGAGTTTGAATCTGACATAGGACAAAAAATTGAGAACATTATAAGCTATGAAGGGAATCAAAGAATTGAGAGATTGGAATCAGGGATGCAAATGTCACAAAGAATGAAAAATGCTGGTTACTTTAGTGTTCCATTTTGTGATGAAACTATTTTGGAAGTTAAGGGTTTGCTTGATGAACATGCTAGTGGATGGGGGATGAAAAAAGATGAAAGCATGTTGGTTCTTACATGGAAAGGAAACAGTTGCGTGTTCGCGGCCGTTTGGGTGCCTAATGAAATTAGGGATCATATCGGTTTGCATGTATCTGTATCTTAA 1371 0.353 MHVHMKAELKATSISFQNQTLFNTHQNTPLPEPEALKGCLGSLDGACIEKLLLHCASALENNDITLAQQVMWVLNNVASPLGDTNQRLTSWFLRALISRASRICPVSMNFKGSNIIQRRLMSVTELAGYVDLIPWHRFGFCASNNEIFKAIKGFKRVHILDFSITPCMQWPTFIDSLAKLQEGPPSLRITVPFFRPMVPPLVNISIHEVGQRLGNFAKFKDVPFEFNVIGDNVSLTSEELSNIESTSFHFESMLSLLNPNMLNLREDEALVVNCQNWLRYLSNDRKGQNISVRDAFINLVKGLNPQIVLLVDEDCDLSSSSLTSRITASFNHLWIPFDALDTFLPKDSCQRIEFESDIGQKIENIISYEGNQRIERLESGMQMSQRMKNAGYFSVPFCDETILEVKGLLDEHASGWGMKKDESMLVLTWKGNSCVFAAVWVPNEIRDHIGLHVSVS 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03756 456 Pfam GRAS domain family 49 440 IPR005202 -
Trre12g03756 456 ProSiteProfiles GRAS family profile. 39 441 IPR005202 -
Trre12g03756 456 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 48 430 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03756 Trre-Chr12 53538832 53540202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03756 28 442 GRAS Transcription Factor Family AT3G49950 44.000 2.70e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre12g03756 GRAS 8.8e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03756 - - gmx:100805056 719.924