Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03754 ATGGATCCAAATTTCCACCCTCTGTTTTCCGGCGACACTTCCGACCCAATGTTTTCAAACTTCAGCCTCCAATCACTTCTCACTTACAACAACTCTTCCTTCTTCTCCGACGACACTCCTTCACTCCCTAACCTCCCTGAAACCATCACCAACCAAATTCCTCAAAACCTTGTTCCAAAAACAGAACACCCTTTAAACCTTCTTCCTCCATTAGAACAATATCTTCCTCCAATTCCACAACCCTTCAACTTCTTCCCTCAACATTATCCACCACCACCCTTTGAATCCTTCAACCGTCTCCCTCAACTCATTTCAAATCAACCCTCTAACAGAAAACGTCTCCTCCACCACCCTGAAACCACTCAACCACCACCACCACCACAATCACTTCGTGGAAAATCTACTTCATTGATTCCTCAAAGCAAGTTAGCAAGACAAAGAAGACAAAAACTAAGTGAGAAAACTCGTTGTTTACAGAAACTAATGCCATGGGATAAGAAAATGGATCAAGCTACACTTTTAGAAGAAGCTTACAAATATGTTAAGTTTTTGCAAGCACAACACTCTGTTCTTCAATCAATGCCATCACACAGCAACAACTACGGCGGCGGAATCGGCGGCGGAGCTGGTGGTGGTGTTTTTGGTGACTTGGAAATGCTGAACAGAAACCAAGCTTTGCAAGTTCTTGTGAACTCACCAGTTGCACAAACAAAGCTTTGTTCACAAGGTTACTGTGTTTTCTCCATGGAACAATTTTCTCTGCTCAGAAAGTTATCAGAGAGAAGACAATTGCAGCAGCAGCAGCAGAGGAATTTGGCTTTGTCTGATCATGGTTCTTCCAAAACTTTCTTTCACTGA 858 0.4289 MDPNFHPLFSGDTSDPMFSNFSLQSLLTYNNSSFFSDDTPSLPNLPETITNQIPQNLVPKTEHPLNLLPPLEQYLPPIPQPFNFFPQHYPPPPFESFNRLPQLISNQPSNRKRLLHHPETTQPPPPPQSLRGKSTSLIPQSKLARQRRQKLSEKTRCLQKLMPWDKKMDQATLLEEAYKYVKFLQAQHSVLQSMPSHSNNYGGGIGGGAGGGVFGDLEMLNRNQALQVLVNSPVAQTKLCSQGYCVFSMEQFSLLRKLSERRQLQQQQQRNLALSDHGSSKTFFH 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03754 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
Trre12g03754 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 194 IPR036638 GO:0046983
Trre12g03754 285 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 115 258 IPR045843 GO:0003700|GO:0006355
Trre12g03754 285 SMART finulus 141 190 IPR011598 GO:0046983
Trre12g03754 285 MobiDBLite consensus disorder prediction 114 152 - -
Trre12g03754 285 MobiDBLite consensus disorder prediction 131 145 - -
Trre12g03754 285 Gene3D - 139 200 IPR036638 GO:0046983
Trre12g03754 285 Pfam Helix-loop-helix DNA-binding domain 143 185 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03754 Trre-Chr12 53496817 53497674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03754 147 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 46.491 3.67e-25 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre12g03754 HLH 0.00029 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03754 - - psat:127083335 317.775