Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre12g03747 | ATGGACATGGATTCAACTGGTGGTTCTTCTTGTTGGCTCTATGATTATGGCTATGATATTTCTGTTCCTGCACCTGATTTCATGCCTTCTGATCACTCTCCTGCTTCTGTTTTCACCTGGAATATGCCTCAGACTCATATCATCAAGCCTCCTTCCTCCAATATCAGCTTGGAAATGGAATACTCACTGGACTCAACTGTACTGGAAAGTGGTCCTTCATCAAAGCGCTTGGAAATGGAATACTCACTGGATTCAACTGTACTGGAAAATGGCCCTTCAAAGCGGTTAAAGACAGAATCATGTGCATCTGGCTCCAAGGCATGTCGCGAGAAATTGCGCAGGGATAAACTGAATGACAAGTTTATGGAATTGAGTTCTGTCTTAGAGCCTGATACACTGCCCAAAACAGACAAAGTTACTTTATTAAATGACGCGGTTCGTGTGGTTACGCAATTAAGAAATGAAGCAGAAAGGCTGAAGGAAAGGAATGACGAATTGCGCGAAAAAGTTAAAGAACTTAAGGCTGAGAAGAATGAGCTTCGCGATGAGAAAAATAAGCTGAAGTTAGACAAAGAAAAGTTGGAACAGCAAGTGAAATTAACAAGTGTACAGTCCAGCTTCCTCTCGAATGCCATGGCGGCTAAAGGACAATCTGCTGCTAACCACAAGCTGATGCCTTTCATTGGTTATCCTGGAATTTCTATGTGGCAGTTTATGTCACCTGCTACAGTTGATACATCACAGGATCATCTGCTTCGACCTCCCGTTGCTTAA | 774 | 0.4276 | MDMDSTGGSSCWLYDYGYDISVPAPDFMPSDHSPASVFTWNMPQTHIIKPPSSNISLEMEYSLDSTVLESGPSSKRLEMEYSLDSTVLENGPSKRLKTESCASGSKACREKLRRDKLNDKFMELSSVLEPDTLPKTDKVTLLNDAVRVVTQLRNEAERLKERNDELREKVKELKAEKNELRDEKNKLKLDKEKLEQQVKLTSVQSSFLSNAMAAKGQSAANHKLMPFIGYPGISMWQFMSPATVDTSQDHLLRPPVA | 257 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre12g03747 | 257 | PANTHER | BHLH TRANSCRIPTION FACTOR | 29 | 257 | IPR044818 | GO:0003700|GO:0006355|GO:0006879|GO:0046983 | |
Trre12g03747 | 257 | Gene3D | - | 105 | 183 | IPR036638 | GO:0046983 | |
Trre12g03747 | 257 | SMART | finulus | 107 | 158 | IPR011598 | GO:0046983 | |
Trre12g03747 | 257 | CDD | bHLH_AtILR3_like | 106 | 181 | - | - | |
Trre12g03747 | 257 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 95 | 168 | IPR036638 | GO:0046983 | |
Trre12g03747 | 257 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 101 | 152 | IPR011598 | GO:0046983 | |
Trre12g03747 | 257 | Pfam | Helix-loop-helix DNA-binding domain | 105 | 152 | IPR011598 | GO:0046983 | |
Trre12g03747 | 257 | Coils | Coil | 142 | 204 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre12g03747 | Trre-Chr12 | 53442303 | 53444364 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre12g03747 | 81 | 257 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G51070 | 59.016 | 7.50e-68 | 210 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Trre12g03747 | HLH | 5.8e-08 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre12g03747 | - | - | psat:127086780 | 380.178 |