Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03746 ATGGACATGGATTCAACTGGTGGTTCTTCTTGTTGGCTCTATGATTATGGCTATGATATTTCTGTTCCTGCACCTGATTTCATGCCTTCTGATCACTCTCCTGCTTCTGTTTTCACCTGGAATATGCCTCAGACTCATATCATCAAGCCTCCTTCCTCCAATATCAGCTTGGAAATGGAATACTCACTGGATTCAACTGTACTGGAAAATGGCCCTTCAAAGCGGTTAAAGACAGAATCATGTGCATCTGGCTCCAAGGCATGTCGCGAGAAATTGCGCAGGGATAAACTGAATGACAAGTTTATGGAATTGAGTTCTGTCTTAGAGCCTGATACACTGCCCAAAACAGACAAAGTTACTTTATTAAATGACGCGGTTCGTGTGGTTACGCAATTAAGAAATGAAGCAGAAAGGCTGAAGGAAAGGAATGACGAATTGCGCGAAAAAGTTAAAGAACTTAAGGCTGAGAAGAATGAGCTTCGCGATGAGAAAAATAAGCTGAAGTTAGACAAAGAAAAGTTGGAACAGCAAGTGAAATTAACAAGTGTACAGTCCAGCTTCCTCTCGAATGCCATGGCGGCTAAAGGACAATCTGCTGCTAACCACAAGCTGATGCCTTTCATTGGTTATCCTGGAATTTCTATGTGGCAGTTTATGTCACCTGCTACAGTTGATACATCACAGGATCATCTGCTTCGACCTCCCGTTGCTTAA 714 0.4258 MDMDSTGGSSCWLYDYGYDISVPAPDFMPSDHSPASVFTWNMPQTHIIKPPSSNISLEMEYSLDSTVLENGPSKRLKTESCASGSKACREKLRRDKLNDKFMELSSVLEPDTLPKTDKVTLLNDAVRVVTQLRNEAERLKERNDELREKVKELKAEKNELRDEKNKLKLDKEKLEQQVKLTSVQSSFLSNAMAAKGQSAANHKLMPFIGYPGISMWQFMSPATVDTSQDHLLRPPVA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03746 237 PANTHER BHLH TRANSCRIPTION FACTOR 10 237 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Trre12g03746 237 SMART finulus 87 138 IPR011598 GO:0046983
Trre12g03746 237 Gene3D - 85 162 IPR036638 GO:0046983
Trre12g03746 237 CDD bHLH_AtILR3_like 86 161 - -
Trre12g03746 237 Coils Coil 122 184 - -
Trre12g03746 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 132 IPR011598 GO:0046983
Trre12g03746 237 Pfam Helix-loop-helix DNA-binding domain 85 132 IPR011598 GO:0046983
Trre12g03746 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 148 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03746 Trre-Chr12 53442303 53444364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03746 51 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51070 57.216 2.56e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre12g03746 HLH 5.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03746 - - psat:127086780 339.732