Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03733 ATGGAAGCTCTATGTGAGTTTTGTCGGGTTGTAAGAGCTATGGTTTACTGCAAGCCAGATTCTGCTCGTCTTTGCTTCCATTGCGATGGGATTGTACACTCTGCAAATTCTTTGTCTCGCAGGCATCCCCGCTCACTCCTCTGTGATAAGTGTCATTTCGACTCAGCAATCGTGCGCTGCGTCGAAAATAAACTATCTCTTTGTCAAGTTTGTGATTGGAATACAAATGACTGTTTTGTATTGGGACATAAACATGTGCTACTCACTTTCTATACTGGTTGTCCCTCTTTGGCAGAGTTAACTAAAATTTGGCCACATTTGGTTGATGCAAATTCATCAAATGCTGCTTGGGAATCACCAAGTACTAGTACTTTGCCTAAAATTGAAAGCAATACCGGTTGCGATCAGCATTTGGAGCAGCAACCCGAAAAGATTGGCTTCGTTGGTTTAGCGAACGAGAAGCTGGATGAAGATCAACCGTGTGTCAAATATGAACCTTGGATTGAGAAATCTCCTATCCTTCAATCAAATTCAAGCTGCACACAATACTGCAAAGATCAAGCATTTTCATTTAATCAAGACTCAAACCAACCAAAGCTTCAAGGAAGCCTTGATGTCAAGGATCTTGTAATTCATCATGAGGGGACTAGTCTCTGTGAAGGTCTCAATGTGGATGATGTTCAATTAAACTTTGAAAATGCTGATGAAATATTTGACTGCTCTCAAAGTGTCACAAAATTCAACCATGAAGATGGAGGAATAGAATGTCTATTAATGGATAAAAACATTCCAGTCACAAAATGTAGCAGTCTCATTGGGACTGCAGTAGAGGCTTCTTCATCAGTTCAACAAGATTGTGTGATTTTTCCATCATCAGGGGCTGGTGGATCAACAAGTGCGATGCAGGCCATCAACACTAATACAAATTGTGCACTTATGACTCCTAGCTGCAACAGAAGCATGCCGCTAGGATTTCCACAGGGTCAAATTCATTCAGGCATACCAATTCAATTACCTAACCTTAATGGTGAGAGCAATGTTACAAAACTTCTAGATTGTGGTTTACCTCCAGTCTTTCATCCTGGTGAATCCACATGGGAATCAAATTTAGAGGGTACATGCCCTCAAGCAAGGGATAAAGCCAAAATGAGATACCAAGAGAAAAAGAAAACTCGAACGTTTGGTAAGCAAATAAGATATGCGTCTCGCAAAGCTAGGGCTGATACAAGAAAACGTGTCAAAGGTAGATTTGTTAAAGCTGGTGAAGCATATGATTATGATCCTAAATTGAGTGACATCTAA 1302 0.4048 MEALCEFCRVVRAMVYCKPDSARLCFHCDGIVHSANSLSRRHPRSLLCDKCHFDSAIVRCVENKLSLCQVCDWNTNDCFVLGHKHVLLTFYTGCPSLAELTKIWPHLVDANSSNAAWESPSTSTLPKIESNTGCDQHLEQQPEKIGFVGLANEKLDEDQPCVKYEPWIEKSPILQSNSSCTQYCKDQAFSFNQDSNQPKLQGSLDVKDLVIHHEGTSLCEGLNVDDVQLNFENADEIFDCSQSVTKFNHEDGGIECLLMDKNIPVTKCSSLIGTAVEASSSVQQDCVIFPSSGAGGSTSAMQAINTNTNCALMTPSCNRSMPLGFPQGQIHSGIPIQLPNLNGESNVTKLLDCGLPPVFHPGESTWESNLEGTCPQARDKAKMRYQEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPKLSDI 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03733 433 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 423 - -
Trre12g03733 433 SMART bboxneu5 1 47 IPR000315 GO:0008270
Trre12g03733 433 Pfam CCT motif 378 420 IPR010402 GO:0005515
Trre12g03733 433 CDD Bbox1_BBX-like 4 47 - -
Trre12g03733 433 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre12g03733 433 ProSiteProfiles CCT domain profile. 378 420 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03733 Trre-Chr12 53362942 53365273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03733 1 428 C2C2-CO-like Transcription Factor Family AT3G21880 37.529 4.24e-82 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre12g03733 CCT 1.8e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03733 - - gmx:100804738 583.948