Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03726 ATGGAACCAATTTGCTCTATTACATCAACTTGTGCTACTCAAATCTCTGCACTTCTCTCTCCTCCCTCACCTCACCAAATTCAGGAATATTATCACAACATTTTCTCTTCAAGGCACTCCAATAGCATCACTGTCAAACAAGATGACAACTTTGGAAAAGGTCTCTATGCTGCAACGGACTTCAAAGAGGATGAACTTGTTCTCAAGGACCAAATGCTTTTTGGGACTCAACATTCTTTCAACAAGATTGATTGTTTTGTCTGTAGCTTCTGCTTTCGTTTTATTGGCTCCATAGAAATTCAAATTGGTAGGAGGCTTTACTTGACACAATTAAGGGCCAATGAGAGTCATGATTGTGATGTAGGAAGCTCTTCAAAGTCTTCAAAAAACTTTCATGAAATGGATTCATCTGATGAAGAGGAGAGCACTTGGCAATGCAGTTCTGGTAGTTCCAAAACTAAAGTTCCTCTCCCTGAAGGTGTTATTGAATCATTGATGAATGGCCAATTGAGATTGCCTTACTCTGAGAAGTTCTCCTTGCCTCCAGCTGTTCCGTGCCATGGTGGATGTGGAGAAGCTTACTACTGCAGCATGTCATGTGCAGAGGCTGATTGGGAATCCTCCCATTCTTTACTCTGTACTGGTGAGAGTTGTGATCCAAGACGTAGGGAGGCACTCCTTAAATTCGTGAAACATGCTAATGAAACAAATGATATATTCCTCCTTGCTGCAAAAGTCATTTCTTCTACCATATTAAGGTATCACAAGTTAAAAGCAAATTGTCTTGCAGAGAAAGGGAAAAATGAGGCATCCTGTGATTCAGACCACTCTAATTTTTCTCTTCTTTTGGAAGCTTGGAAGCCTATATCAATGGGATACAAAAAAAGGTGGTGGGACTGCATTGCATTACCAGATGATATTGATTCTTCCGATGAAGCGTCATTCAGGATGCAAATTAAAGAGTTGGCATTTGAGTCTCTCCAACTACTTCAGTCAGCAATATTTGACAAGGAATGTGAGCCGTTATTCTCCCTTGAAATCTACGGACATATCATTGGCATGTTTGAGCTGAATAATCTTGATTTGGTTGTTGCTTCTCCGATGGAGGATTACTTTTTATACATTGATGATATGACGAATCCTGATAAGGAAGAAGCTGAGAAAATTACACAACCAATTCTAGATGCTCTAGGTGAAGATTATTCTACTAGTTGCGAAGGAACTGCGTTTTTTCCTTTGCAAAGCTGTATGAACCATTCATGTTGTCCTAATGCCAAAGCTTTCAAAAGAGATGAGGATAGAGATGGCCAAGCAACAATAATTGCAATGAGGCCTATCTGTAAGGGAGAAGAGATAACCATTTCATATGTTGATGAAGACCTTTCATTTGAGGAGAGACAAGCATCCCTTGCAGATTATGGTTTTAGGTGCAGGTGTCCAAAATGCATTGAAGAAGAGCCATAA 1464 0.3989 MEPICSITSTCATQISALLSPPSPHQIQEYYHNIFSSRHSNSITVKQDDNFGKGLYAATDFKEDELVLKDQMLFGTQHSFNKIDCFVCSFCFRFIGSIEIQIGRRLYLTQLRANESHDCDVGSSSKSSKNFHEMDSSDEEESTWQCSSGSSKTKVPLPEGVIESLMNGQLRLPYSEKFSLPPAVPCHGGCGEAYYCSMSCAEADWESSHSLLCTGESCDPRRREALLKFVKHANETNDIFLLAAKVISSTILRYHKLKANCLAEKGKNEASCDSDHSNFSLLLEAWKPISMGYKKRWWDCIALPDDIDSSDEASFRMQIKELAFESLQLLQSAIFDKECEPLFSLEIYGHIIGMFELNNLDLVVASPMEDYFLYIDDMTNPDKEEAEKITQPILDALGEDYSTSCEGTAFFPLQSCMNHSCCPNAKAFKRDEDRDGQATIIAMRPICKGEEITISYVDEDLSFEERQASLADYGFRCRCPKCIEEEP 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03726 487 SMART set_7 41 463 IPR001214 GO:0005515
Trre12g03726 487 Pfam SET domain 52 456 IPR001214 GO:0005515
Trre12g03726 487 Gene3D SET domain 377 486 IPR046341 -
Trre12g03726 487 SUPERFAMILY SET domain 40 480 IPR046341 -
Trre12g03726 487 Pfam MYND finger 185 213 IPR002893 -
Trre12g03726 487 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 486 IPR044237 GO:0008168
Trre12g03726 487 CDD SET_SMYD 396 482 - -
Trre12g03726 487 Gene3D - 124 217 - -
Trre12g03726 487 ProSiteProfiles SET domain profile. 41 457 IPR001214 GO:0005515
Trre12g03726 487 SUPERFAMILY HIT/MYND zinc finger-like 188 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03726 Trre-Chr12 53310272 53314818 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre12g03726 SET 6.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03726 - - gmx:100803651 810.061