Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03719 ATGGCCAACGTGGATCACTCCTCTGAAGAAATTTCAGCTAATATTTTTGCAGAGGAATCCAATTCTAGTCAATCTTCCAAGGTTGAAATCTCTGAAGATGAGGAAGATCTTATCATCAGAATGTATAAACTAGTGGGGGATAGGTGGCCTTTAATTGCTGGAAGAATTCCGGGAAGAACAGCTGAAGAAATAAAGAATTACTGGACTTCAAGATACTCATCAAGTAGCCAATGA 234 0.3889 MANVDHSSEEISANIFAEESNSSQSSKVEISEDEEDLIIRMYKLVGDRWPLIAGRIPGRTAEEIKNYWTSRYSSSSQ 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03719 77 CDD SANT 31 68 IPR001005 -
Trre12g03719 77 Gene3D - 31 71 - -
Trre12g03719 77 MobiDBLite consensus disorder prediction 1 27 - -
Trre12g03719 77 FunFam MYB-like transcription factor 29 71 - -
Trre12g03719 77 SUPERFAMILY Homeodomain-like 30 72 IPR009057 -
Trre12g03719 77 SMART sant 26 74 IPR001005 -
Trre12g03719 77 ProSiteProfiles Myb-like domain profile. 22 72 IPR001005 -
Trre12g03719 77 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 76 IPR017930 -
Trre12g03719 77 MobiDBLite consensus disorder prediction 1 30 - -
Trre12g03719 77 Pfam Myb-like DNA-binding domain 31 69 IPR001005 -
Trre12g03719 77 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 27 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03719 Trre-Chr12 53260805 53261374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03719 30 73 MYB Transcription Factor Family AT5G14750 59.091 2.58e-16 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre12g03719 Myb_DNA-binding 2.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03719 - - tpra:123899046 135.191