Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03716 ATGAACGACCTTCTTACTGATTCATTTGTTGGTGAGGCTACTAATGGACAGCCTTCTAGACAAGGTGACATTGAAATGGGAATGCAGGTTCAAAGAAGCAACTCTGATTTGGGGATGGAAACTTTTAATAAACAGATTCAAGATGCTGATAAACAAATTGAGAAGCTGTCCACACTCCTTCAAAAGCTAAAGGAAGCTAATGAGGAATCAAAAGCTGTTACAAAAGCATCTGCCATGAAAGCTATCAAGAAGAGAATGGAAAAAGATATTGATGAAGTTGGAAAGATTGCACATGGGGTCAAAGCGAAAATAGAAGCTATCAACAGAGATAATCTAAATAATAGACAAAAGCCTGGCTGTGAGAAGGGAACTGGTATTGACAGAGCAAGGATGAATATGACAAATGCCTTGACCAAAAAGTTCAGGGATCTTATGACAGAGTTTCAGACTCTCAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTTATTACAGTCACGGGAACTAGACCAGATGATCAGACGATTGACCACCTGATAGAAACCGGAAACAGTGAGCAAATCTTCCAGAAGGCAATTCTTGAATCAGGCCGAGGACAGGTTGTAAGCACGGTAGAAGAAATTCAGGAGAGACATGATGCGGTGAAAGAAATTGAGAAAAAACTTCTTGATTTACATCAGATTTACCTTGACATGGCAGTGTTGGTTGATGCTCAAGGAGAAACTTTAGACAACATCGAAAGCCAGGTCAACAATGCAGTCGATCATGTCCAGAGAGGGACAACTGCACTTCAAAGTGCTAAGAAACTCCAGAAGAACTCTCGAAAATGGATGTGCATTGCCATCATGATTCTGTTAGTAATAGTAGCTATCATAGTTGTTGGTGTTCTCAAACCTTGGAAGAGTAACAATGGCGCTTGA 933 0.403 MNDLLTDSFVGEATNGQPSRQGDIEMGMQVQRSNSDLGMETFNKQIQDADKQIEKLSTLLQKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIAHGVKAKIEAINRDNLNNRQKPGCEKGTGIDRARMNMTNALTKKFRDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDQTIDHLIETGNSEQIFQKAILESGRGQVVSTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGETLDNIESQVNNAVDHVQRGTTALQSAKKLQKNSRKWMCIAIMILLVIVAIIVVGVLKPWKSNNGA 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03716 310 CDD SynN 39 196 IPR006011 GO:0016020
Trre12g03716 310 SMART tSNARE_6 204 271 IPR000727 -
Trre12g03716 310 FunFam Syntaxin 132 202 302 - -
Trre12g03716 310 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Trre12g03716 310 Gene3D - 34 163 - -
Trre12g03716 310 SMART SynN_4 34 160 IPR006011 GO:0016020
Trre12g03716 310 SUPERFAMILY t-snare proteins 37 264 IPR010989 GO:0016020|GO:0016192
Trre12g03716 310 Gene3D - 203 302 - -
Trre12g03716 310 MobiDBLite consensus disorder prediction 1 24 - -
Trre12g03716 310 Pfam SNARE domain 245 297 IPR000727 -
Trre12g03716 310 FunFam Syntaxin 132 34 163 - -
Trre12g03716 310 Coils Coil 39 76 - -
Trre12g03716 310 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Trre12g03716 310 CDD SNARE_syntaxin1-like 208 269 - -
Trre12g03716 310 PANTHER SYNTAXIN 37 290 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03716 Trre-Chr12 53247239 53250744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03716 1 310 SNARE and Associated Proteins AT3G03800 62.258 2.13e-125 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03716 K08486 - gmx:100800991 526.939