Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03708 ATGCAAGCAAGTTTAATGATTCCGGCTAGTAACATGCCTTCAATCATCGGAAGAAACAACAACAATAACAACGTTGGTGTCTTTGGATTTTCTTCATCTCTCTCTCTTGGCCAGCCAAATCTAATGGAAGCTGGACAACAACAACATCATCATCATCAACTTCTACCATTTGACATGACAACAAATAATAACAACAACAACAATACTTCAGAAAGTGATGTGCCTAGAATCCGCGAAGATGAATTATTCGATAGTGCTACGAAATCTGGTAACAGTGAAAATCAAGAAGGTGCTAATTCAGGTGATGATCAAGATCAACCTCGTGCTAAGAAGAAACGTTATCACCGTCATACACAACATCAGATCCAAGAAATGGAAGCTTTTTTTAAGGAATGTCCACACCCTGATGATAAGCAAAGGAAGGAACTAAGCAGAGAGTTAGGGTTAGAGCCATTGCAAGTGAAGTTTTGGTTTCAAAACAAACGTACTCAAATGAAGACTCAACAAGAGAGGCATGAGAATACTCAACTAAGAACTGAGAATGAGAAACTTCGTGCTGATAACATGAGGTTTAGAGAAGCGCTTAGCAATGCATCTTGTCCTAATTGTGGTGGACCAACTGCTATTGGAGAAATGTCGTTCGATGAACATCACTTAAGGCTCGAAAATGCTCGCCTTAGAGAAGAGATTGATAGGATATCCGCCATTGCTGCGAAGTACGTAGGGAAGCCAGTGGTGAGTTACCCACTACTCTCCCCTACATCGGTTCCTCCTCGTCCTCTAGACCTTGGCATTGGTGGTTTTGGAGGACAACCTGGAATCGGTGGAGGAGATATGTATGGAGCTGGAGATCTTCTTAGATCAATAAGTGGACCAACTGAAGCTGATAAACCAATGATAATTGAGCTAGCTGTTGCTGCAATGGAAGAACTCATTGGAATGGCACAAATGGGTGATCCACTTTGGTTAACTACACTTGAAGGTGGTTCCATACTCAATGAAGAAGAATATGTTAGGTCTTTTCCTAGAGGAATTGGTCCAAAACCAGCTGGTTTTAAATGTGAAGCTTCAAGAGAAACTTCTGTTGTCATCATGAATCATGTTAATCTTGTTGAGATCCTCATGGACGTGAACCAATGGTCCACAGTTTTTTCTGGAATTGTTTCAAGAGCAATGACATTGGAAGTTCTATCAACTGGGGTGGCAGGGAACTACAATGGTGCATTACAAGTGATGACAGCTGAACTTCAAGTACCTTCACCACTAGTGCCAACTAGAGAGAGTTATTTTGTAAGGTATTGTAAGCAACATGCTGATGAAATGCCCAATGGCTACTCAAAGGTTATTTGGGTGGAGCATGTAGAAGTTGATGATAGAGGTGTTCATAATCTATACAAACAACTTGTTAGCTCAGGACATGCATTTGGTGCAAAACGTTGGATTGCAACCTTAGATCGACAATGTGAAAGACTTGCTAGTGCCATGGCAACCAACATTCCCACAGTCGATGTCGGCGTGATAACAAATCAAGATGGAAGAAAGAGCATGTTAAAACTAGCTGAAAGAATGTGTATAAGCTTTTGTGCTGGAGTGAGTGCTTCAACAGCTCACACGTGGACAACACTTTCGGGTACAGGAGCTGATGATGTAAGGGTAATGACCCGTAAAAGTGTAGATGACCCAGGAAGACCAGCTGGCATTGTCCTTAGTGCTGCAACTTCTTTTTGGCTTCCAGTTACACCTAAAAGAGTTTTTGAATTTCTTAGAGATGAAAACTCAAGAAGTGAGTGGGATATCCTTTCCAATGGTGGAGTTGTTCAAGAAATGGCACATATTGCTAATGGAAGAGATACTGGAAATTGTGTTTCTCTTCTTCGAGTGAATAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAAAGTTGCACGGACACAACAGGCTCATTTGTGATCTATGCACCTGTAGACATAGTTGCAATGAATGTGGTACTAAATGGAGGTGATCCAGATTATGTAGCACTTCTTCCATCTGGATTTGCTATACTTCCAGATGGAGGTGTTGGTGGTGAAAATGGAAATGGTGGATCTTTATTAACAGTTGCATTTCAAATATTGGTTGATTCTGTTCCTACTGCAAAACTTTCTCTTGGATCAGTTGCTACAGTTAATAATCTTATTGCTTGTACTGTTGAGAGGATTAAAGCTTCTTTGTCAGGTGAAGTTGCTTGA 2235 0.4081 MQASLMIPASNMPSIIGRNNNNNNVGVFGFSSSLSLGQPNLMEAGQQQHHHHQLLPFDMTTNNNNNNNTSESDVPRIREDELFDSATKSGNSENQEGANSGDDQDQPRAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQQERHENTQLRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPTSVPPRPLDLGIGGFGGQPGIGGGDMYGAGDLLRSISGPTEADKPMIIELAVAAMEELIGMAQMGDPLWLTTLEGGSILNEEEYVRSFPRGIGPKPAGFKCEASRETSVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMCISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPAGIVLSAATSFWLPVTPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDTTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGGVGGENGNGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEVA 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03708 744 SMART START_1 302 490 IPR002913 GO:0008289
Trre12g03708 744 MobiDBLite consensus disorder prediction 57 120 - -
Trre12g03708 744 MobiDBLite consensus disorder prediction 87 102 - -
Trre12g03708 744 CDD homeodomain 111 169 IPR001356 GO:0003677
Trre12g03708 744 ProSiteProfiles START domain profile. 293 451 IPR002913 GO:0008289
Trre12g03708 744 SUPERFAMILY Homeodomain-like 97 169 IPR009057 -
Trre12g03708 744 SMART HOX_1 109 172 IPR001356 GO:0003677
Trre12g03708 744 Coils Coil 167 194 - -
Trre12g03708 744 MobiDBLite consensus disorder prediction 57 72 - -
Trre12g03708 744 FunFam Homeobox-leucine zipper protein HDG1 97 184 - -
Trre12g03708 744 Gene3D - 97 185 - -
Trre12g03708 744 ProSiteProfiles 'Homeobox' domain profile. 108 168 IPR001356 GO:0003677
Trre12g03708 744 SUPERFAMILY Bet v1-like 510 736 - -
Trre12g03708 744 SUPERFAMILY Bet v1-like 293 492 - -
Trre12g03708 744 ProSitePatterns 'Homeobox' domain signature. 143 166 IPR017970 GO:0000981|GO:0006355
Trre12g03708 744 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 440 739 IPR042160 -
Trre12g03708 744 CDD START_ArGLABRA2_like 297 489 - -
Trre12g03708 744 Pfam Homeodomain 111 166 IPR001356 GO:0003677
Trre12g03708 744 Pfam START domain 303 439 IPR002913 GO:0008289
Trre12g03708 744 Pfam START domain 441 490 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03708 Trre-Chr12 53071955 53078149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03708 61 744 Homeobox Transcription Factor Family AT1G05230 75.867 0.0 1075
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre12g03708 START 4.8e-25 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03708 K09338 - gmx:100797992 1251.5