Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03707 ATGCAAGCAAGTTTAATGATTCCGGCTAGTAACATGCCTTCAATCATCGGAAGAAACAACAACAATAACAACGTTGGTGTCTTTGGATTTTCTTCATCTCTCTCTCTTGGCCAGCCAAATCTAATGGAAGCTGGACAACAACAACATCATCATCATCAACTTCTACCATTTGACATGACAACAAATAATAACAACAACAACAATACTTCAGAAAGTGATGTGCCTAGAATCCGCGAAGATGAATTATTCGATAGTGCTACGAAATCTGGTAACAGTGAAAATCAAGAAGGTGCTAATTCAGGTGATGATCAAGATCAACCTCGTGCTAAGAAGAAACGTTATCACCGTCATACACAACATCAGATCCAAGAAATGGAAGCTTTTTTTAAGGAATGTCCACACCCTGATGATAAGCAAAGGAAGGAACTAAGCAGAGAGTTAGGGTTAGAGCCATTGCAAGTGAAGTTTTGGTTTCAAAACAAACGTACTCAAATGAAGACTCAACAAGAGAGGCATGAGAATACTCAACTAAGAACTGAGAATGAGAAACTTCGTGCTGATAACATGAGGTTTAGAGAAGCGCTTAGCAATGCATCTTGTCCTAATTGTGGTGGACCAACTGCTATTGGAGAAATGTCGTTCGATGAACATCACTTAAGGCTCGAAAATGCTCGCCTTAGAGAAGAGATTGATAGGATATCCGCCATTGCTGCGAAGTACGTAGGGAAGCCAGTGGTGAGTTACCCACTACTCTCCCCTACATCGGTTCCTCCTCGTCCTCTAGACCTTGGCATTGGTGGTTTTGGAGGACAACCTGGAATCGGTGGAGGAGATATGTATGGAGCTGGAGATCTTCTTAGATCAATAAGTGGACCAACTGAAGCTGATAAACCAATGATAATTGAGCTAGCTGTTGCTGCAATGGAAGAACTCATTGGAATGGCACAAATGGGTGATCCACTTTGGTTAACTACACTTGAAGGTGGTTCCATACTCAATGAAGAAGAATATGTTAGGTCTTTTCCTAGAGGAATTGGTCCAAAACCAGCTGGTTTTAAATGTGAAGCTTCAAGAGAAACTTCTGTTGTCATCATGAATCATGTTAATCTTGTTGAGATCCTCATGGACGTGAACCAATGGTCCACAGTTTTTTCTGGAATTGTTTCAAGAGCAATGACATTGGAAGTTCTATCAACTGGGGTGGCAGGGAACTACAATGGTGCATTACAAGTGATGACAGCTGAACTTCAAGTACCTTCACCACTAGTGCCAACTAGAGAGAGTTATTTTGTAAGCCCTTCTGCTAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCAAAGGTTATTTGGGTGGAGCATGTAGAAGTTGATGATAGAGGTGTTCATAATCTATACAAACAACTTGTTAGCTCAGGACATGCATTTGGTGCAAAACGTTGGATTGCAACCTTAGATCGACAATGTGAAAGACTTGCTAGTGCCATGGCAACCAACATTCCCACAGTCGATGTCGGCGTGATAACAAATCAAGATGGAAGAAAGAGCATGTTAAAACTAGCTGAAAGAATGTGTATAAGCTTTTGTGCTGGAGTGAGTGCTTCAACAGCTCACACGTGGACAACACTTTCGGGTACAGGAGCTGATGATGTAAGGGTAATGACCCGTAAAAGTGTAGATGACCCAGGAAGACCAGCTGGCATTGTCCTTAGTGCTGCAACTTCTTTTTGGCTTCCAGTTACACCTAAAAGAGTTTTTGAATTTCTTAGAGATGAAAACTCAAGAAGTGAGTGGGATATCCTTTCCAATGGTGGAGTTGTTCAAGAAATGGCACATATTGCTAATGGAAGAGATACTGGAAATTGTGTTTCTCTTCTTCGAGTGAATAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAAAGTTGCACGGACACAACAGGCTCATTTGTGATCTATGCACCTGTAGACATAGTTGCAATGAATGTGGTACTAAATGGAGGTGATCCAGATTATGTAGCACTTCTTCCATCTGGATTTGCTATACTTCCAGATGGAGGTGTTGGTGGTGAAAATGGAAATGGTGGATCTTTATTAACAGTTGCATTTCAAATATTGGTTGATTCTGTTCCTACTGCAAAACTTTCTCTTGGATCAGTTGCTACAGTTAATAATCTTATTGCTTGTACTGTTGAGAGGATTAAAGCTTCTTTGTCAGGTGAAGTTGCTTGA 2259 0.409 MQASLMIPASNMPSIIGRNNNNNNVGVFGFSSSLSLGQPNLMEAGQQQHHHHQLLPFDMTTNNNNNNNTSESDVPRIREDELFDSATKSGNSENQEGANSGDDQDQPRAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQQERHENTQLRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPTSVPPRPLDLGIGGFGGQPGIGGGDMYGAGDLLRSISGPTEADKPMIIELAVAAMEELIGMAQMGDPLWLTTLEGGSILNEEEYVRSFPRGIGPKPAGFKCEASRETSVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMCISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPAGIVLSAATSFWLPVTPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDTTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGGVGGENGNGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEVA 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03707 752 CDD START_ArGLABRA2_like 297 497 - -
Trre12g03707 752 MobiDBLite consensus disorder prediction 57 120 - -
Trre12g03707 752 MobiDBLite consensus disorder prediction 87 102 - -
Trre12g03707 752 FunFam Homeobox-leucine zipper protein HDG1 97 184 - -
Trre12g03707 752 SUPERFAMILY Bet v1-like 518 744 - -
Trre12g03707 752 Pfam START domain 433 498 IPR002913 GO:0008289
Trre12g03707 752 Pfam START domain 303 432 IPR002913 GO:0008289
Trre12g03707 752 SUPERFAMILY Bet v1-like 293 500 - -
Trre12g03707 752 CDD homeodomain 111 169 IPR001356 GO:0003677
Trre12g03707 752 SMART HOX_1 109 172 IPR001356 GO:0003677
Trre12g03707 752 Coils Coil 167 194 - -
Trre12g03707 752 MobiDBLite consensus disorder prediction 57 72 - -
Trre12g03707 752 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 108 747 IPR042160 -
Trre12g03707 752 SMART START_1 302 498 IPR002913 GO:0008289
Trre12g03707 752 ProSiteProfiles 'Homeobox' domain profile. 108 168 IPR001356 GO:0003677
Trre12g03707 752 ProSiteProfiles START domain profile. 293 501 IPR002913 GO:0008289
Trre12g03707 752 ProSitePatterns 'Homeobox' domain signature. 143 166 IPR017970 GO:0000981|GO:0006355
Trre12g03707 752 SUPERFAMILY Homeodomain-like 97 169 IPR009057 -
Trre12g03707 752 Pfam Homeodomain 111 166 IPR001356 GO:0003677
Trre12g03707 752 Gene3D - 97 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03707 Trre-Chr12 53071955 53078149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03707 61 752 Homeobox Transcription Factor Family AT1G05230 76.838 0.0 1091
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre12g03707 START 9.1e-21 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03707 K09338 - gmx:100797992 1270.76