Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03704 ATGGAGGTGTTGGGGGTAAAGGGTTTTTTCATCTTGGTTTTATGGTTGTGGATTCCAAATGAAGTTATGGCAATCATTGGAAACTCTAGTGTTTCTTCTAGACCTAGTGTTTTGAAAATTGGAGCATTGTTTACTGTTGATTCTGTGATTGGAAGATCAGCTAAAAGAGGAATCATGGCTGCAATTGAAGATGTTAATGCTAATAAGAGTATTCTTCCTGGTGTTAAACTTGATGTTATTTTACATGATACAAATTGCAGTGGATTTCTTGGAACAGTTGAAGCTTTGCAGTTGATGGAGAATGAAGTTGTTGCTGCAATTGGTCCACAATCTTCAGGAATAGCACATATCATCTCTCATGTAGCTAATGAACTCCATATACCTCTTCTTTCATTTGGGGCAACAGATCCAACTCTATCTTCTCTGCAGTTTCCGTATTTCGTCCGAACAACGCACAGTGACTATTTTCAGATGTATGCAATTGCAGACCTTGTTGATTTTTATAGATGGAGGCAAGTAATTGCCATTTTTGTAGACGATGATAATGGAAGAAACGGTGTTTCAGTACTCGGAGACGCATTAGCTAAGAAACGTGGAAAGATATCTTACAAAGCTGCATTATCTCCTCTAGCCACCAAGAGTGATATCAGTGACATGTTAAACAGTGTTAACTTAATGGAATCAAGAGTCTTTGTTCTCCATGTCAATCCCGATAATGGTTTGAAAATTTTTTCTATTGCGAAGAATCTTGGAATGATGGCTAGTGGTTATGTGTGGATTGCAACAGATTGGCTTCCTTCAAAGTTGGATTCAATAGAGCCAGTTGATGCTAACACATTAAATCTCCTTCAAGGTGTTTTAGCTTTGAGGCATCACACTCCTGATACTAATCTCAAAAAGAGTTTTTTCTCGAGGTTGAAGAACGTAAATGGCACGGAAAGTTCGAGCTTCAACTCTTATGCTTTATATGCATATGATTCTGTTTGGTTAGCAGCTTATGCTCTTGATACTTTTCTTAAAGAAGGTGGAAACATATCTTTCTCATCTGATCCTAAGTTAATTGACACAAAAGGAAGCATGTTGCATTTGTCTTCGCTCCGTGTCTTCGATGGTGGCCCGTTGTTTCTCCCTACGCTTTTGAAAATGAATTTCACTGGTTTGAGTGGTCAGATTCAGTTCGATAACGGAAAGAATCTAATTCATCCATCATATGATATCCTTAACATCGGAGATTCTGGTTCCCGAAGAGTCGGTTATTGGACTAATTACTCCGGTTTATCAGTTTTAGCTCCTGAAATTTTATACAAGAAACCACCTAACACTTCAACAAGCAATCAAAAACTGTTTAGTGTTTTGTGGCCTGGAGAAACTGTAGCTATACCAAAAGGATGGGTTTTTCCTAACAATGGAATGCCTTTGAGAATAGCAGTGCCTCATAGAATAAGCTACTTGGATTTTGTTTCTAAGGACAAGAATCCACCTGGAGTTCGAGGCTATTGCATTGATGTCTTTGAAGCAGCCATAAACTTGTTGCCTTATCCTGTTCCGCGAAAATATATATTATACGGAGATGGTAATAGAAATCCCAGCTACAGCGAGCTTGTCAACCAGGTCGCAATTAATAACTTCGATGCAGCTGTTGGAGATGTTACTATTGTCCCAAACCGAACAAGGCTTTTGGATTTCACTCAACCTTTCATGGAATCAGGGCTGGTAGTTGTTGTTCCTGTTAAGGAAATCAAATCAAGCCCTTGGGCTTTTCTCAAGCCATTCACTGCTCAAATGTGGTGTGTTACCGGTGCCTTTTTCCTTTTTGTCGGAGCTGTTGTATGGATTCTTGAGCACAGACACAATCCTGAGTTCCGAGGTCCACCTAAGAAGCAACTTATGACAATCTTTTGGTTTACTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGCGGTCTTGGGCGATTCGTGCTAATCATATGGCTTTTCGTAGTATTAATCATCAATTCAAGCTACACTGCAAGCTTAACATCGATCCTCACAGTGCAGCAACTATCGTCACAAATTGAAGGAATTGACAGCTTGATATCAGGTACTCAACCGATTGGAATTCAAGACGGGTCATTTGCAAGGAGGTATCTGATAGATGAACTCAATATACAACCATCGAGGATAGTTTCATTGAAAGATCCAAAGGCGTATATCGATGCCCTTACGCGTGGACCTAAAGGAGGAGGAGTTGTGGCTATTGTTGATGAACTTCCTTATATTGAAATCTTTATGTCTAGTACCAACTGCAAGTTCAGAACTGTTGGAAATGAGTTCACTAAAAGTGGTTGGGGATTTGGATTCCAGAGGGACTCGCCCCTTGCTGTCGATATGTCAACTGCGATACTTCAACTCTCAGAAAATGGTGACCTGCAAAAGATCCATGACAAATGGCTTTCAAAACAAAATTGTGCTGCAAAAGTTGACGACGTTGATTCAAATGAACTATCTCTTAATAGCTTCTGGGGTCTCTTTCTTATATGTGGCATTGCATGTCTCATTTCTATGATTGTATTCTTCATTAGAGTGTTCTGTCAATACATGAAATTCATCCCAGAGAGTGAGGATGAAGTTGACCAGGAAAATCCGCCACATAGGCCTAGAAGAAGTTTTCGATCATCGAGAAGCTTCAAAGACTTGATTGAATTTGTGGATAAGAGAGAAAGAGAAATCAAGGAGATACTTAGGCAGAAGAGTAAGAAAAGGAGACGTGACGACGATCAATTTAGTCCACCTACCTAA 2787 0.3961 MEVLGVKGFFILVLWLWIPNEVMAIIGNSSVSSRPSVLKIGALFTVDSVIGRSAKRGIMAAIEDVNANKSILPGVKLDVILHDTNCSGFLGTVEALQLMENEVVAAIGPQSSGIAHIISHVANELHIPLLSFGATDPTLSSLQFPYFVRTTHSDYFQMYAIADLVDFYRWRQVIAIFVDDDNGRNGVSVLGDALAKKRGKISYKAALSPLATKSDISDMLNSVNLMESRVFVLHVNPDNGLKIFSIAKNLGMMASGYVWIATDWLPSKLDSIEPVDANTLNLLQGVLALRHHTPDTNLKKSFFSRLKNVNGTESSSFNSYALYAYDSVWLAAYALDTFLKEGGNISFSSDPKLIDTKGSMLHLSSLRVFDGGPLFLPTLLKMNFTGLSGQIQFDNGKNLIHPSYDILNIGDSGSRRVGYWTNYSGLSVLAPEILYKKPPNTSTSNQKLFSVLWPGETVAIPKGWVFPNNGMPLRIAVPHRISYLDFVSKDKNPPGVRGYCIDVFEAAINLLPYPVPRKYILYGDGNRNPSYSELVNQVAINNFDAAVGDVTIVPNRTRLLDFTQPFMESGLVVVVPVKEIKSSPWAFLKPFTAQMWCVTGAFFLFVGAVVWILEHRHNPEFRGPPKKQLMTIFWFTFSTMFFSHRENTVSGLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQDGSFARRYLIDELNIQPSRIVSLKDPKAYIDALTRGPKGGGVVAIVDELPYIEIFMSSTNCKFRTVGNEFTKSGWGFGFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLSKQNCAAKVDDVDSNELSLNSFWGLFLICGIACLISMIVFFIRVFCQYMKFIPESEDEVDQENPPHRPRRSFRSSRSFKDLIEFVDKREREIKEILRQKSKKRRRDDDQFSPPT 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03704 928 CDD PBP1_GABAb_receptor_plant 39 428 IPR044440 -
Trre12g03704 928 SMART GluR_14 474 816 IPR001320 GO:0015276|GO:0016020
Trre12g03704 928 FunFam Glutamate receptor 584 714 - -
Trre12g03704 928 Pfam Ligand-gated ion channel 816 847 IPR001320 GO:0015276|GO:0016020
Trre12g03704 928 PIRSF IGluLR_plant 6 926 IPR017103 -
Trre12g03704 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 324 336 - -
Trre12g03704 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 51 67 - -
Trre12g03704 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 111 139 - -
Trre12g03704 928 Pfam Bacterial extracellular solute-binding proteins, family 3 530 815 IPR001638 -
Trre12g03704 928 Coils Coil 899 919 - -
Trre12g03704 928 Gene3D - 153 426 - -
Trre12g03704 928 SUPERFAMILY Periplasmic binding protein-like II 448 816 - -
Trre12g03704 928 FunFam Glutamate receptor 710 818 - -
Trre12g03704 928 Gene3D - 760 821 - -
Trre12g03704 928 Pfam Receptor family ligand binding region 60 409 IPR001828 -
Trre12g03704 928 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 879 IPR015683 -
Trre12g03704 928 Gene3D - 585 705 - -
Trre12g03704 928 CDD GluR_Plant 472 814 - -
Trre12g03704 928 Gene3D - 59 401 - -
Trre12g03704 928 Gene3D - 468 584 - -
Trre12g03704 928 FunFam Glutamate receptor 468 584 - -
Trre12g03704 928 SUPERFAMILY Periplasmic binding protein-like I 33 465 IPR028082 -
Trre12g03704 928 FunFam Glutamate receptor 153 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03704 Trre-Chr12 53057297 53062312 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03704 34 785 Ion Channels AT1G05200 69.180 0.0 1122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03704 K05387 - gmx:100799912 1442.17