Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03703 ATGGTGTTGATAGTATGGTTTTTCCTGCTGATGGTGATAACAGCTAGTTATACAGCAAGCTTGACGTCAATTCTCACAGTGGAACAACTTTCGTCACCGATCACAGGAATCGATAGCTTGATTGCAAGTAACTGGCCTATTGGATACCAAGTTGGGTCGTTTGCTTACAGCTATCTGACAGATAATCTTTATGTATCAAGATCAAGACTTGTTTCCTTAGGCTCCCCCGAGGAATATGCGGTAGCACTTCGGAATGGACCGTCTGGTGGTGGTGTAGCAGCTATTGTCGATGAGCTTCCGTATGTGGAATTGTTTCTGTCAAAAGAAACTGAATTCGGTATTATCGGTCAGCCATTTACCAGAAGCAGTTGGGGATTTGCTTTTCAAAGAGACTCCCCTCTTGCACTTGACATGTCAACTGCAATATTGAAACTAGCCGAGAGTGGAGAGCTTCAAAAGATACATGAGAAATGGTTTTGCAAGATGGGATGTCCCGGCGAAAGGAAAAGCAACCCTAAACCAGACCAACTTCATCTGATCAGCTTTTGGGGTCTATATCTGTCGTGCGCTGTCATCTCTATCGTCGCACTTGTTCTGTTTCTGCTGCGAATGATTAGCCAATATGTTGGCTTCAAACAAAGGCAAAAGGACATTGCTGCTCCATCCTCGGAACAATCGAAAAGTCATTGTTCCCGAGTTGTTGTTAACTTCTTTAACTTCATTGATAAAAAGGAAGATGCTATCAAGAAAATGTTCACCCAATGTGACAATCCTCATAACCCCAACTGA 789 0.4309 MVLIVWFFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYSYLTDNLYVSRSRLVSLGSPEEYAVALRNGPSGGGVAAIVDELPYVELFLSKETEFGIIGQPFTRSSWGFAFQRDSPLALDMSTAILKLAESGELQKIHEKWFCKMGCPGERKSNPKPDQLHLISFWGLYLSCAVISIVALVLFLLRMISQYVGFKQRQKDIAAPSSEQSKSHCSRVVVNFFNFIDKKEDAIKKMFTQCDNPHNPN 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03703 262 Gene3D - 1 62 - -
Trre12g03703 262 Gene3D - 108 166 - -
Trre12g03703 262 FunFam Glutamate receptor 56 163 - -
Trre12g03703 262 SUPERFAMILY Periplasmic binding protein-like II 14 160 - -
Trre12g03703 262 SMART GluR_14 2 161 IPR001320 GO:0015276|GO:0016020
Trre12g03703 262 Pfam Ligand-gated ion channel 1 190 IPR001320 GO:0015276|GO:0016020
Trre12g03703 262 Pfam Bacterial extracellular solute-binding proteins, family 3 14 159 IPR001638 -
Trre12g03703 262 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 214 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03703 Trre-Chr12 53049112 53050183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03703 1 260 Ion Channels AT2G32400 57.197 1.45e-98 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03703 K05387 - gmx:100796389 449.514