Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03691 ATGATCTCCAACAATTTAATCAACAATAATAATAATAATAACAATGTTGAGGTTGACATAGACTCATCCAAAGATGATGTTGATGCAAAAACTGGCATGAAGAAGGGACCATGGACCCCACAAGAAGACATGATTTTGATAGAGTACGTAAACAAGCATGGTGAAGGGAATTGGAATTCTGTTCAAAAGAATTCAGGATTGTTAAGGTGTGGAAAAAGCTGCAGACTTAGATGGGCCAATCATCTAAGGCCCAATCTTAAGAAAGGTTCATTTTCTGAAGATGAAGAAAAAATCATCATTGAACTTCATGCTAAGCTTGGAAACAAATGGGCTAGAATGGCTGCTCAGTTGCCAGGGAGAACAGACAATGAAATCAAAAACTTTTGGAACACGAGAATGAAAAGGCGTCAGAGAGCAGGATTACCTCTTTATCCTCCTGAAGTTCAAGCAGAAGCTATTGCATACAATAATAATCTAATGCAATCCTCTTCTTCACCATCATTTTCCTTACTCTTATCTTCATGTTACCCTAAGAATCTTGATCATGATCAAAACAATCATGATTATAATCCTATTCAAAATTACAACTCTGATTCTTCTAATCATTACACCAATCCATGTCCACAATTCAACTTTTCCAATGATCATGAAAATTTAGAGATTAATGAAACTCATGTTTTGCCAAATTCACCTTCACTTTCTCCTTATCCATCTTCATCATCAAATCTTTTCAACCAAAGTTTTGGTAATCCAAGTGATTCACATGATTACCAATATTCCGAAAATTTGAGCTATGATCATCAACATGGATTCAATGCAGGGTCTTTGTATGATTCTGAAACTCCTGTTTCATCTTATGCTAGTGGTGTTGATGGTTTAATGGGAAATTCAAACATGGTTAATGATTGCTATGAAGATTATGCACCACTATCACCTAAAGGAAGAAATAGTGGACTTTTGGATGATCTTGTGATGGAAGGTAGAAATATTTCATGCAATGATAAGGCTAGGAGTGAGGATTCAACATTTAAGGGGAATGAATCTTATAAGAGGAAAAGAATGGAGGGTGAAGAATATGATGAGGAAAGAGACATCATTCCTTTGATGAAGAAGAGGAGTGTTGATGAGACTCAAAAGAAAGATTTTAGCTCTTCTCAATTGCCAACAGGGAAGAAACCAATTGAGGAGGATCCATTAGCAGGGATGTATTCAGTGTATGATGATGACTTGGATTGCTTGCTCAACGATTATCCCTCAGAAATACCAATGCCTGAATGGTATTGTAGAGGAAAAAGCCAATCTTTGGGACTTGAAACTCAAAATGATCATGCTACTTCACCATCTCGCCCTAACAATCAAGAATTTGCTTGGACTCTTGGATCAACTTGGAGCAACATGCCTGGTATATGTTAA 1413 0.3652 MISNNLINNNNNNNNVEVDIDSSKDDVDAKTGMKKGPWTPQEDMILIEYVNKHGEGNWNSVQKNSGLLRCGKSCRLRWANHLRPNLKKGSFSEDEEKIIIELHAKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPLYPPEVQAEAIAYNNNLMQSSSSPSFSLLLSSCYPKNLDHDQNNHDYNPIQNYNSDSSNHYTNPCPQFNFSNDHENLEINETHVLPNSPSLSPYPSSSSNLFNQSFGNPSDSHDYQYSENLSYDHQHGFNAGSLYDSETPVSSYASGVDGLMGNSNMVNDCYEDYAPLSPKGRNSGLLDDLVMEGRNISCNDKARSEDSTFKGNESYKRKRMEGEEYDEERDIIPLMKKRSVDETQKKDFSSSQLPTGKKPIEEDPLAGMYSVYDDDLDCLLNDYPSEIPMPEWYCRGKSQSLGLETQNDHATSPSRPNNQEFAWTLGSTWSNMPGIC 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03691 470 MobiDBLite consensus disorder prediction 372 396 - -
Trre12g03691 470 FunFam MYB-related transcription factor 34 87 - -
Trre12g03691 470 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Trre12g03691 470 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 18 436 - -
Trre12g03691 470 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Trre12g03691 470 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Trre12g03691 470 MobiDBLite consensus disorder prediction 182 211 - -
Trre12g03691 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Trre12g03691 470 Gene3D - 90 136 - -
Trre12g03691 470 MobiDBLite consensus disorder prediction 1 36 - -
Trre12g03691 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 82 IPR017930 -
Trre12g03691 470 SMART sant 87 135 IPR001005 -
Trre12g03691 470 SMART sant 34 84 IPR001005 -
Trre12g03691 470 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
Trre12g03691 470 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Trre12g03691 470 MobiDBLite consensus disorder prediction 1 18 - -
Trre12g03691 470 FunFam Transcription factor MYB97 90 165 - -
Trre12g03691 470 CDD SANT 37 82 IPR001005 -
Trre12g03691 470 CDD SANT 90 131 IPR001005 -
Trre12g03691 470 Gene3D - 34 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03691 Trre-Chr12 52849101 52852914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03691 32 186 MYB Transcription Factor Family AT2G32460 71.613 8.89e-73 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre12g03691 Myb_DNA-binding 7.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03691 K09422 - gmx:100798860 457.218