Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03680 ATGTGCAGAGAACCCATTTTGAAACTCATTTCCAAAATTGAAAACACCCAAATCAATCTCACTCTTCATTCCGATTCGTTCCGATTCAGTTTCCGATTCGTGATTGTCGTGCCTGAGAATCATTCCGATTCCGATTCCGATTCAGTTTACAAAATCAATCTCACGACGAACCCTAGGTTTGAGTTGAGGTCGGAACTTTCGTTCGTTCCGATTCGTTCTCTGATTTCAACCTTCAGCTTTGTTCTCATATTCGTTCTCCTAAGATTCAGGTATCCCCGCACTTCTTCACTTATGTATCTTGCTTCTTCACTTATGAAAAAATTGGGCTGGAGGTCTTATTGTAAATTTATATTTGCAACTTTCTTGTTTCTTTACATCACTGTTTTAACTGTCATGGGTGTGAATAGGTCACACTCTAAGTGTGTCTCTGTTGGTATTCAAGAAATTGCTTGGGCTTTTGGTGGTATGATCTTTGCACTTGTCTACTGCACTGCTGGAATTTCAGGTGGGCACATAAACCCAGCAGTGACATTTGGTCTGTTTTTGGCTAGGAAGTTGTCTCTGACAAGAGCAGTATTCTACATAATAATGCAGTGTATTGGAGCTATATGTGGTGCTGGTGTGGTGAAGGGTTTTGAGGGTAATGCTCGTTATGAGTTGTTCAAAGGTGGAGCAAATGTTGTGAATCCTGGTTACACCAAGGGTGATGGTCTTGGAGCTGAGATTGTTGGTACTTTTGTTCTTGTCTACACTGTCTTCTCTGCAACTGATGCCAAGAGAAACGCAAGGGACTCTCATGTTCCGATTTTGGCACCTCTTCCAATTGGGTTTGCTGTGTTTTTGGTTCACTTGGCTACTATTCCCATAACTGGAACTGGCATTAACCCAGCTTGGAGTCTTCGATTATTAAAAAATTAA 918 0.4129 MCREPILKLISKIENTQINLTLHSDSFRFSFRFVIVVPENHSDSDSDSVYKINLTTNPRFELRSELSFVPIRSLISTFSFVLIFVLLRFRYPRTSSLMYLASSLMKKLGWRSYCKFIFATFLFLYITVLTVMGVNRSHSKCVSVGIQEIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCIGAICGAGVVKGFEGNARYELFKGGANVVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPAWSLRLLKN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03680 305 PRINTS Major intrinsic protein family signature 111 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g03680 305 PRINTS Major intrinsic protein family signature 153 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g03680 305 PRINTS Major intrinsic protein family signature 190 209 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g03680 305 PRINTS Major intrinsic protein family signature 240 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g03680 305 PRINTS Major intrinsic protein family signature 276 298 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g03680 305 SUPERFAMILY Aquaporin-like 113 300 IPR023271 -
Trre12g03680 305 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 103 300 IPR034294 -
Trre12g03680 305 ProSitePatterns MIP family signature. 171 179 IPR022357 -
Trre12g03680 305 Gene3D Glycerol uptake facilitator protein. 99 302 IPR023271 -
Trre12g03680 305 NCBIfam MIP family channel protein 118 300 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g03680 305 Pfam Major intrinsic protein 110 300 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g03680 305 CDD MIP 111 300 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03680 Trre-Chr12 52700878 52702935 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03680 110 300 Major Intrinsic Protein MIP AT3G61430 83.246 1.11e-108 315