Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03679 ATGTGCAGAGAACCCATTTTGAAACTCATTTCCAAAATTGAAAACACCCAAATCAATCTCACTCTTCATTCCGATTCGTTCCGATTCAGTTTCCGATTCGTGATTGTCGTGCCTGAGAATCATTCCGATTCCGATTCCGATTCAGTTTACAAAATCAATCTCACGACGAACCCTAGGTTTGAGTTGAGGTCGGAACTTTCGTTCGTTCCGATTCGTTCTCTGATTTCAACCTTCAGCTTTGTTCTCATATTCGTTCTCCTAAGATTCAGGTCACACTCTAAGTGTGTCTCTGTTGGTATTCAAGAAATTGCTTGGGCTTTTGGTGGTATGATCTTTGCACTTGTCTACTGCACTGCTGGAATTTCAGGTGGGCACATAAACCCAGCAGTGACATTTGGTCTGTTTTTGGCTAGGAAGTTGTCTCTGACAAGAGCAGTATTCTACATAATAATGCAGTGTATTGGAGCTATATGTGGTGCTGGTGTGGTGAAGGGTTTTGAGGGTAATGCTCGTTATGAGTTGTTCAAAGGTGGAGCAAATGTTGTGAATCCTGGTTACACCAAGGGTGATGGTCTTGGAGCTGAGATTGTTGGTACTTTTGTTCTTGTCTACACTGTCTTCTCTGCAACTGATGCCAAGAGAAACGCAAGGGACTCTCATGTTCCGATTTTGGCACCTCTTCCAATTGGGTTTGCTGTGTTTTTGGTTCACTTGGCTACTATTCCCATAACTGGAACTGGCATTAACCCAGCTTGGAAGCTCATTAGATGTTTGAGGTCTATTAAGGAACATGCCTTTGTCGCATCCGAGTATCCGATTGTAATAACCCTAGAAGACCATCTTACTCCAGATCTTCAGGCTAAAGTGGCTGAGCACTGTGTGTGGATGAAGGAATTGATGAGCTTGCTGAATTCTGTGGGGCTGGAAAGGCTGTTGCAGAATGTACTGCAAGAGCAATGGGTGGTTCCATTGTTGTCAGAATCGGGATCAGAATCGTAA 999 0.4364 MCREPILKLISKIENTQINLTLHSDSFRFSFRFVIVVPENHSDSDSDSVYKINLTTNPRFELRSELSFVPIRSLISTFSFVLIFVLLRFRSHSKCVSVGIQEIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCIGAICGAGVVKGFEGNARYELFKGGANVVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPAWKLIRCLRSIKEHAFVASEYPIVITLEDHLTPDLQAKVAEHCVWMKELMSLLNSVGLERLLQNVLQEQWVVPLLSESGSES 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03679 332 CDD MIP 72 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g03679 332 Gene3D Glycerol uptake facilitator protein. 69 275 IPR023271 -
Trre12g03679 332 Pfam Phosphatidylinositol-specific phospholipase C, X domain 252 294 IPR000909 -
Trre12g03679 332 SUPERFAMILY Aquaporin-like 74 254 IPR023271 -
Trre12g03679 332 PRINTS Major intrinsic protein family signature 107 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g03679 332 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g03679 332 PRINTS Major intrinsic protein family signature 194 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g03679 332 PRINTS Major intrinsic protein family signature 230 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g03679 332 PRINTS Major intrinsic protein family signature 144 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g03679 332 ProSitePatterns MIP family signature. 125 133 IPR022357 -
Trre12g03679 332 Pfam Major intrinsic protein 77 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g03679 332 SUPERFAMILY PLC-like phosphodiesterases 249 294 IPR017946 GO:0006629|GO:0008081
Trre12g03679 332 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 245 293 - -
Trre12g03679 332 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 71 256 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03679 Trre-Chr12 52700878 52704728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03679 71 266 Major Intrinsic Protein MIP AT3G61430 75.377 3.16e-98 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03679 K09872 - gmx:100793242 320.472